- downgrade anndata>=0.7 and scanpy>=1.4.6 [galen] - make loompy optional, raise sckmisc import error [adam] - fix PBMCDataset download bug [galen] - fix AnnDatasetFromAnnData \_X in adata.obs bug [galen]
0.6.6
- add tqdm to within cluster DE genes [adam] - restore tqdm to use simple bar instead of ipywidget [adam] - move to numpydoc for doctstrings [adam] - update issues templates [adam] - Poisson variable gene selection [valentine-svensson] - BrainSmallDataset set defualt save_path_10X [gokcen-eraslan] - train_size must be float between 0.0 and 1.0 [galen] - bump dependency versions [galen] - remove reproducibility notebook [galen] - fix scanVI dataloading [pierre]
0.6.5
- updates to totalVI posterior functions and notebooks [adam] - update seurat v3 HVG selection now using skmisc loess [adam]
0.6.4
- add back Python 3.6 support [adam] - get_sample_scale() allows gene selection [valentine-svensson] - bug fix to the dataset to anndata method with how cell measurements are stored [adam] - fix requirements [adam]
0.6.3
- bug in version for Louvian in setup.py [adam]
0.6.2
- update highly variable gene selection to handle sparse matrices [adam] - update DE docstrings [pierre] - improve posterior save load to also handle subclasses [pierre] - Create NB and ZINB distributions with torch and refactor code accordingly [pierre] - typos in autozivae [achille] - bug in csc sparse matrices in anndata data loader [adam]