- First scVI TensorFlow version [romain]
[1001]: https://github.com/YosefLab/scvi-tools/pull/1001
[1004]: https://github.com/YosefLab/scvi-tools/pull/1004
[1005]: https://github.com/YosefLab/scvi-tools/pull/1005
[1006]: https://github.com/YosefLab/scvi-tools/pull/1006
[1009]: https://github.com/YosefLab/scvi-tools/pull/1009
[1011]: https://github.com/YosefLab/scvi-tools/pull/1011
[1016]: https://github.com/YosefLab/scvi-tools/pull/1016
[1017]: https://github.com/YosefLab/scvi-tools/pull/1017
[1019]: https://github.com/YosefLab/scvi-tools/pull/1019
[1021]: https://github.com/YosefLab/scvi-tools/pull/1021
[1024]: https://github.com/YosefLab/scvi-tools/pull/1025
[1025]: https://github.com/YosefLab/scvi-tools/pull/1025
[1028]: https://github.com/YosefLab/scvi-tools/pull/1028
[1030]: https://github.com/YosefLab/scvi-tools/pull/1033
[1033]: https://github.com/YosefLab/scvi-tools/pull/1033
[1034]: https://github.com/YosefLab/scvi-tools/pull/1034
[1037]: https://github.com/YosefLab/scvi-tools/pull/1037
[1041]: https://github.com/YosefLab/scvi-tools/pull/1041
[1043]: https://github.com/YosefLab/scvi-tools/pull/1043
[1046]: https://github.com/YosefLab/scvi-tools/pull/1046
[1054]: https://github.com/YosefLab/scvi-tools/pull/1054
[1055]: https://github.com/YosefLab/scvi-tools/pull/1055
[1059]: https://github.com/YosefLab/scvi-tools/pull/1059
[1060]: https://github.com/YosefLab/scvi-tools/pull/1060
[1061]: https://github.com/YosefLab/scvi-tools/pull/1061
[1064]: https://github.com/YosefLab/scvi-tools/pull/1064
[1066]: https://github.com/YosefLab/scvi-tools/pull/1066
[1071]: https://github.com/YosefLab/scvi-tools/pull/1071
[1072]: https://github.com/YosefLab/scvi-tools/pull/1072
[1074]: https://github.com/YosefLab/scvi-tools/pull/1074
[1076]: https://github.com/YosefLab/scvi-tools/pull/1076
[1078]: https://github.com/YosefLab/scvi-tools/pull/1078
[1079]: https://github.com/YosefLab/scvi-tools/pull/1079
[1082]: https://github.com/YosefLab/scvi-tools/pull/1082
[1085]: https://github.com/YosefLab/scvi-tools/pull/1085
[1090]: https://github.com/YosefLab/scvi-tools/pull/1090
[1098]: https://github.com/YosefLab/scvi-tools/pull/1098
[1099]: https://github.com/YosefLab/scvi-tools/pull/1099
[1100]: https://github.com/YosefLab/scvi-tools/pull/1100
[1101]: https://github.com/YosefLab/scvi-tools/pull/1101
[1103]: https://github.com/YosefLab/scvi-tools/pull/1103
[1104]: https://github.com/YosefLab/scvi-tools/pull/1104
[1114]: https://github.com/YosefLab/scvi-tools/pull/1114
[1115]: https://github.com/YosefLab/scvi-tools/pull/1115
[1116]: https://github.com/YosefLab/scvi-tools/pull/1116
[1118]: https://github.com/YosefLab/scvi-tools/pull/1118
[1122]: https://github.com/YosefLab/scvi-tools/pull/1122
[1123]: https://github.com/YosefLab/scvi-tools/pull/1123
[1127]: https://github.com/YosefLab/scvi-tools/pull/1127
[1129]: https://github.com/YosefLab/scvi-tools/pull/1129
[1132]: https://github.com/YosefLab/scvi-tools/pull/1132
[1150]: https://github.com/YosefLab/scvi-tools/pull/1150
[1151]: https://github.com/YosefLab/scvi-tools/pull/1151
[1157]: https://github.com/YosefLab/scvi-tools/pull/1157
[1158]: https://github.com/YosefLab/scvi-tools/pull/1158
[1180]: https://github.com/YosefLab/scvi-tools/pull/1180
[1182]: https://github.com/YosefLab/scvi-tools/pull/1182
[1183]: https://github.com/YosefLab/scvi-tools/pull/1183
[1193]: https://github.com/YosefLab/scvi-tools/pull/1193
[1204]: https://github.com/YosefLab/scvi-tools/pull/1204
[1208]: https://github.com/YosefLab/scvi-tools/pull/1208
[1213]: https://github.com/YosefLab/scvi-tools/pull/1213
[1216]: https://github.com/YosefLab/scvi-tools/pull/1216
[1228]: https://github.com/YosefLab/scvi-tools/pull/1228
[1231]: https://github.com/YosefLab/scvi-tools/pull/1231
[1232]: https://github.com/YosefLab/scvi-tools/pull/1232
[1235]: https://github.com/YosefLab/scvi-tools/pull/1235
[1237]: https://github.com/YosefLab/scvi-tools/pull/1237
[1242]: https://github.com/YosefLab/scvi-tools/pull/1242
[1251]: https://github.com/YosefLab/scvi-tools/pull/1251
[1253]: https://github.com/YosefLab/scvi-tools/pull/1253
[1255]: https://github.com/YosefLab/scvi-tools/pull/1255
[1257]: https://github.com/YosefLab/scvi-tools/pull/1257
[1267]: https://github.com/YosefLab/scvi-tools/pull/1267
[1269]: https://github.com/YosefLab/scvi-tools/pull/1269
[1274]: https://github.com/YosefLab/scvi-tools/pull/1274
[1282]: https://github.com/YosefLab/scvi-tools/pull/1282
[1284]: https://github.com/YosefLab/scvi-tools/pull/1284
[1290]: https://github.com/YosefLab/scvi-tools/pull/1290
[1296]: https://github.com/YosefLab/scvi-tools/pull/1296
[1301]: https://github.com/YosefLab/scvi-tools/pull/1301
[1302]: https://github.com/YosefLab/scvi-tools/pull/1302
[1309]: https://github.com/YosefLab/scvi-tools/pull/1309
[1311]: https://github.com/YosefLab/scvi-tools/pull/1311
[1324]: https://github.com/YosefLab/scvi-tools/pull/1324
[1334]: https://github.com/YosefLab/scvi-tools/pull/1334
[1338]: https://github.com/YosefLab/scvi-tools/pull/1338
[1339]: https://github.com/YosefLab/scvi-tools/pull/1339
[1342]: https://github.com/YosefLab/scvi-tools/pull/1342
[1354]: https://github.com/YosefLab/scvi-tools/pull/1354
[1356]: https://github.com/YosefLab/scvi-tools/pull/1356
[1361]: https://github.com/YosefLab/scvi-tools/pull/1361
[1364]: https://github.com/YosefLab/scvi-tools/pull/1364
[1367]: https://github.com/YosefLab/scvi-tools/pull/1367
[1369]: https://github.com/YosefLab/scvi-tools/pull/1369
[1371]: https://github.com/YosefLab/scvi-tools/pull/1371
[1372]: https://github.com/YosefLab/scvi-tools/pull/1372
[1385]: https://github.com/YosefLab/scvi-tools/pull/1385
[1386]: https://github.com/YosefLab/scvi-tools/pull/1386
[1393]: https://github.com/YosefLab/scvi-tools/pull/1393
[1403]: https://github.com/YosefLab/scvi-tools/pull/1403
[1406]: https://github.com/YosefLab/scvi-tools/pull/1406
[1411]: https://github.com/YosefLab/scvi-tools/pull/1411
[1413]: https://github.com/YosefLab/scvi-tools/pull/1413
[1415]: https://github.com/YosefLab/scvi-tools/pull/1415
[1416]: https://github.com/YosefLab/scvi-tools/pull/1416
[1417]: https://github.com/YosefLab/scvi-tools/pull/1417
[1431]: https://github.com/YosefLab/scvi-tools/pull/1431
[1435]: https://github.com/YosefLab/scvi-tools/pull/1435
[1436]: https://github.com/YosefLab/scvi-tools/pull/1436
[1438]: https://github.com/YosefLab/scvi-tools/pull/1438
[1439]: https://github.com/YosefLab/scvi-tools/pull/1439
[1441]: https://github.com/YosefLab/scvi-tools/pull/1441
[1442]: https://github.com/YosefLab/scvi-tools/pull/1442
[1445]: https://github.com/YosefLab/scvi-tools/pull/1445
[1448]: https://github.com/YosefLab/scvi-tools/pull/1448
[1451]: https://github.com/YosefLab/scvi-tools/pull/1451
[1457]: https://github.com/YosefLab/scvi-tools/pull/1457
[1458]: https://github.com/YosefLab/scvi-tools/pull/1458
[1463]: https://github.com/YosefLab/scvi-tools/pull/1463
[1466]: https://github.com/YosefLab/scvi-tools/pull/1466
[1467]: https://github.com/YosefLab/scvi-tools/pull/1467
[1469]: https://github.com/YosefLab/scvi-tools/pull/1469
[1470]: https://github.com/YosefLab/scvi-tools/pull/1470
[1473]: https://github.com/YosefLab/scvi-tools/pull/1473
[1474]: https://github.com/YosefLab/scvi-tools/pull/1474
[1475]: https://github.com/YosefLab/scvi-tools/pull/1475
[1479]: https://github.com/YosefLab/scvi-tools/pull/1479
[1498]: https://github.com/YosefLab/scvi-tools/pull/1498
[1499]: https://github.com/YosefLab/scvi-tools/pull/1499
[1501]: https://github.com/YosefLab/scvi-tools/pull/1501
[1502]: https://github.com/YosefLab/scvi-tools/pull/1502
[1504]: https://github.com/YosefLab/scvi-tools/pull/1504
[1505]: https://github.com/YosefLab/scvi-tools/pull/1505
[1506]: https://github.com/YosefLab/scvi-tools/pull/1506
[1508]: https://github.com/YosefLab/scvi-tools/pull/1508
[1515]: https://github.com/YosefLab/scvi-tools/pull/1515
[1519]: https://github.com/YosefLab/scvi-tools/pull/1519
[1520]: https://github.com/YosefLab/scvi-tools/pull/1520
[1527]: https://github.com/YosefLab/scvi-tools/pull/1527
[1529]: https://github.com/YosefLab/scvi-tools/pull/1529
[1532]: https://github.com/YosefLab/scvi-tools/pull/1532
[1542]: https://github.com/YosefLab/scvi-tools/pull/1542
[1548]: https://github.com/YosefLab/scvi-tools/pull/1548
[1555]: https://github.com/YosefLab/scvi-tools/pull/1555
[1556]: https://github.com/YosefLab/scvi-tools/pull/1556
[1566]: https://github.com/scverse/scvi-tools/issues/1566
[1575]: https://github.com/YosefLab/scvi-tools/pull/1575
[1580]: https://github.com/scverse/scvi-tools/pull/1580
[1585]: https://github.com/YosefLab/scvi-tools/pull/1585
[1595]: https://github.com/scverse/scvi-tools/pull/1595
[1617]: https://github.com/scverse/scvi-tools/pull/1617
[1618]: https://github.com/scverse/scvi-tools/pull/1618
[1622]: https://github.com/scverse/scvi-tools/pull/1622
[1629]: https://github.com/scverse/scvi-tools/pull/1629
[1637]: https://github.com/scverse/scvi-tools/pull/1637
[1639]: https://github.com/scverse/scvi-tools/pull/1639
[1645]: https://github.com/scverse/scvi-tools/pull/1645
[1657]: https://github.com/scverse/scvi-tools/pull/1657
[1660]: https://github.com/scverse/scvi-tools/pull/1660
[1665]: https://github.com/scverse/scvi-tools/pull/1665
[1667]: https://github.com/scverse/scvi-tools/pull/1667
[1671]: https://github.com/scverse/scvi-tools/pull/1671
[1672]: https://github.com/YosefLab/scvi-tools/pull/1672
[1674]: https://github.com/scverse/scvi-tools/pull/1674
[1678]: https://github.com/scverse/scvi-tools/pull/1678
[1683]: https://github.com/YosefLab/scvi-tools/pull/1683
[1686]: https://github.com/scverse/scvi-tools/pull/1686
[1689]: https://github.com/YosefLab/scvi-tools/pull/1689
[1692]: https://github.com/scverse/scvi-tools/pull/1692
[1695]: https://github.com/YosefLab/scvi-tools/pull/1695
[1696]: https://github.com/YosefLab/scvi-tools/pull/1696
[1697]: https://github.com/YosefLab/scvi-tools/pull/1697
[1700]: https://github.com/scverse/scvi-tools/pull/1700
[1702]: https://github.com/scverse/scvi-tools/pull/1702
[1709]: https://github.com/YosefLab/scvi-tools/pull/1709
[1710]: https://github.com/YosefLab/scvi-tools/pull/1710
[1711]: https://github.com/YosefLab/scvi-tools/pull/1711
[1719]: https://github.com/YosefLab/scvi-tools/pull/1719
[1731]: https://github.com/YosefLab/scvi-tools/pull/1731
[1732]: https://github.com/YosefLab/scvi-tools/pull/1732
[1733]: https://github.com/YosefLab/scvi-tools/pull/1733
[1737]: https://github.com/YosefLab/scvi-tools/pull/1737
[1741]: https://github.com/YosefLab/scvi-tools/pull/1741
[1743]: https://github.com/YosefLab/scvi-tools/pull/1743
[1747]: https://github.com/YosefLab/scvi-tools/pull/1747
[1749]: https://github.com/YosefLab/scvi-tools/pull/1749
[1751]: https://github.com/YosefLab/scvi-tools/pull/1751
[1773]: https://github.com/YosefLab/scvi-tools/pull/1773
[877]: https://github.com/YosefLab/scvi-tools/pull/887
[879]: https://github.com/YosefLab/scvi-tools/pull/879
[885]: https://github.com/YosefLab/scvi-tools/pull/885
[886]: https://github.com/YosefLab/scvi-tools/pull/886
[887]: https://github.com/YosefLab/scvi-tools/pull/887
[889]: https://github.com/YosefLab/scvi-tools/pull/889
[895]: https://github.com/YosefLab/scvi-tools/pull/895
[903]: https://github.com/YosefLab/scvi-tools/pull/903
[905]: https://github.com/YosefLab/scvi-tools/pull/905
[913]: https://github.com/YosefLab/scvi-tools/pull/913
[921]: https://github.com/YosefLab/scvi-tools/pull/921
[923]: https://github.com/YosefLab/scvi-tools/pull/923
[924]: https://github.com/YosefLab/scvi-tools/pull/924
[925]: https://github.com/YosefLab/scvi-tools/pull/925
[927]: https://github.com/YosefLab/scvi-tools/pull/927
[929]: https://github.com/YosefLab/scvi-tools/pull/929
[931]: https://github.com/YosefLab/scvi-tools/pull/931
[933]: https://github.com/YosefLab/scvi-tools/pull/933
[934]: https://github.com/YosefLab/scvi-tools/pull/934
[938]: https://github.com/YosefLab/scvi-tools/pull/938
[940]: https://github.com/YosefLab/scvi-tools/pull/940
[947]: https://github.com/YosefLab/scvi-tools/pull/947
[949]: https://github.com/YosefLab/scvi-tools/pull/949
[959]: https://github.com/YosefLab/scvi-tools/pull/959
[966]: https://github.com/YosefLab/scvi-tools/pull/966
[967]: https://github.com/YosefLab/scvi-tools/pull/967
[971]: https://github.com/YosefLab/scvi-tools/pull/971
[988]: https://github.com/YosefLab/scvi-tools/pull/988
[989]: https://github.com/YosefLab/scvi-tools/pull/989
[990]: https://github.com/YosefLab/scvi-tools/pull/990
[999]: https://github.com/YosefLab/scvi-tools/pull/999
[achille]: https://github.com/ANazaret
[adam]: https://github.com/adamgayoso
[adamgayoso]: https://github.com/adamgayoso
[cane11]: https://github.com/cane11
[casey-greene]: https://github.com/cgreene
[cataclysmus]: https://github.com/cataclysmus
[chenling]: https://github.com/chenlingantelope
[david-kelley]: https://github.com/davek44
[eddie]: https://github.com/Edouard360
[eduardo-beltrame]: https://github.com/Munfred
[florianbarkmann]: https://github.com/FlorianBarkmann
[francesco-brundu]: https://github.com/fbrundu
[gabriel]: https://github.com/gabmis
[galen]: https://github.com/galenxing
[galenxing]: https://github.com/galenxing
[giovp]: https://github.com/giovp
[gokcen-eraslan]: https://github.com/gokceneraslan
[grst]: https://github.com/grst
[han-yuan]: https://github.com/hy395
[james-webber]: https://github.com/jamestwebber
[jamie-morton]: https://github.com/mortonjt
[jeff]: https://github.com/jeff-regier
[jjhong922]: https://github.com/jjhong922
[john-reid]: https://github.com/JohnReid
[jules]: https://github.com/jules-samaran
[marianogabitto]: https://github.com/marianogabitto
[martinkim0]: https://github.com/martinkim0
[max]: https://github.com/maxime1310
[michael-raevsky]: https://github.com/raevskymichail
[mjayasur]: https://github.com/mjayasur
[mkarikom]: https://github.com/mkarikom
[morris-frank]: https://github.com/morris-frank
[munfred]: https://github.com/Munfred
[njbernstein]: https://github.com/njbernstein
[oscar]: https://github.com/oscarclivio
[pierre]: https://github.com/PierreBoyeau
[pierreboyeau]: https://github.com/PierreBoyeau
[primoz-godec]: https://github.com/PrimozGodec
[ricomnl]: https://github.com/ricomnl
[rk900]: https://github.com/RK900
[romain]: https://github.com/romain-lopez
[romain-lopez]: https://github.com/romain-lopez
[saketkc]: https://github.com/saketkc
[stephen-flemming]: https://github.com/sjfleming
[talashuach]: https://github.com/talashuach
[tommycelsius]: https://github.com/tommycelsius
[valentine-svensson]: https://github.com/vals
[vitkl]: https://github.com/vitkl
[watiss]: https://github.com/watiss
[william-yang]: https://github.com/triyangle
[wukathy]: https://github.com/wukathy
[yining]: https://github.com/imyiningliu
[genomepy]: https://github.com/vanheeringen-lab/genomepy
[hatch]: https://hatch.pypa.io/latest/
[hugging face models]: https://huggingface.co/models
[keep a changelog]: https://keepachangelog.com/en/1.0.0/
[original scbasset model]: https://github.com/calico/scBasset
[poetry]: https://python-poetry.org/
[semantic versioning]: https://semver.org/spec/v2.0.0.html