Sdcflows

==========================
Feature release in the 2.11.x series.

This release supports numpy 2 and Python 3.13.

* FIX: Normalize BIDS-URIs to subject-relative (458)
* FIX: Only fit high-frequency spline for SyN-SDC (457)
* ENH: Allow Jacobian correction to be toggled on/off (462)
* ENH: Dilate fmap and bold masks during coregistration (463)
* TEST: Clear registry consistently to avoid order dependency (464)
* DOC: Plot correct workflow in init_syn_preprocessing_wf docstring (460)
* CI: Drop CircleCI, using GHA only (459)

======================
Feature release in the 2.10.x series.

The main change is a bugfix when fitting multi-level B-Splines to some
noisy fieldmaps.
The multi-level fitting, while being theoretically nice, does not really
bring anything immediately as we are not generally inverting the distortion.
In this release, the default fitting has been change to single-level B-Splines,
with a spacing similar to TOPUP's defaults.

With thanks to Sunjae Shim (sjshim) for sharing Spiral-echo fieldmaps that
were failing prior the patch in 453.

CHANGES
-------

* FIX: Revision of the B-Spline fitting code (453)
* FIX: Building Docker image on ARM64 devices (449)
* ENH: Improve plots in jupyter notebook (452)
* DOC: Fix ``ValueError`` in notebook's output. (450)

=====================
Feature release in the 2.9.x series.

The main change is that B0FieldIdentifiers with special characters
are now sanitized and exposed through a ``FieldmapEstimator.sanitized_id``
attribute.

Workflow names and input/output connections will use ``sanitized_id``,
to ensure compatibility with filenames and workflow graph generation.
Internal lookup tables will continue to use the the unsanitized ``bids_id``.

* FIX: Update suffix only when finding related fieldmap files (436)
* FIX: Remove unused ANTs parameter that was removed in 2.4.1 (431)
* RF: Add sanitized_id field to FieldmapEstimation (444)
* DOC: Un-mock the already-imported numpy (440)
* CI: Bump actions/cache from 3 to 4 (429)

========================
Bug-fix release in the 2.8.x series.

Fixes doc builds and CLI support for fieldmapless workflows.
Introduces support for BIDS-URIs.

* FIX: Enable fieldmapless by default in CLI (426)
* FIX: Pandoc requires Texlive to render LaTeX in notebook (427)
* FIX: New test ``test_wrangler_URIs`` had the wrong oracle (425)
* ENH: Resolve BIDS-URIs (349)
* TEST: Use less confusing function name for testing CLI with --dry-run (424)
* MNT: Bump actions/download-artifact from 3 to 4 (418)
* MNT: Bump actions/upload-artifact from 3 to 4 (417)
* CI: Move PR doc build into main doc build, add texlive to build dependencies (428)

========================
New feature release in the 2.8.x series.

This release fixes a bug in converting SyN-SDC displacements to fieldmaps,
resulting in exaggerated corrections. As this makes changes to the structure
of a workflow and the expected inputs of a workflow node, this release is
considered a minor release.

* FIX: Derive field from SyN displacements using EPI affine (421)
* FIX: Change ``os.basename`` to ``os.path.basename`` (419)
* DOC: Add smeisler to contributors (420)

=========================
New feature release in the 2.7.0 series.

This release includes an updated CLI, which allows ``sdcflows`` to be
run as a BIDS App. To achieve the previous behavior of ``sdcflows-find-estimators``,
use the ``-n`` flag.

Addtional bug fixes and enhancements are included.

* FIX: Drop header before resampling image to avoid unsafe cast (415)
* FIX: Wrangler now ignores ``part-phase`` EPI files (407)
* ENH: Standalone CLI now estimates fieldmaps (408)
* ENH: Add support for ASL data (411)
* ENH: Enable rendering of the Jupyter notebooks (409)
* MNT: Migrate to PEP517/518 packaging (410)
* CI: bump actions/setup-python from 4 to 5 (412)
* CI: bump conda-incubator/setup-miniconda from 2 to 3 (406)