Sdcflows

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Bug-fix release in the 2.5.x series.

* FIX: Use ``lsqr`` solver for spline fit, rerun on extreme values (366)
* FIX: Ensure metadata is not present in entity query (367)
* RF/FIX: Prioritize sbref and shortest echo for SyN-SDC (364)

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New feature release in the 2.5.x series.

This release includes a number of changes to default behaviors.
SyN-SDC will be performed per-BOLD/DWI image, unless specified otherwise with
``B0FieldIdentifier``\s, and may now be specified with T2w images as anatomical
references as well.
Additionally, PEPolar fieldmaps will only be grouped if they share ``IntendedFor``
metadata.

Finally, as a small UX improvement, if magnitude1/magnitude2 images have differing
affines but are in register, we will now copy the header rather than requiring the
user to update the header themselves.

* FIX: Ensure IntendedFor metadata is a subject-relative path (360)
* ENH: Split SyN fieldmap estimates per-EPI (312)
* ENH: Allow non-T1w anatomical estimators (358)
* ENH: Function to calculate reference grids aligned with the coefficients (355)
* ENH: Check registration of magnitude1/magnitude2 images and update headers (356)
* RF: Split PEPolar fieldmaps by intent, if available (342)
* CI: Use supported codecov uploaders (348)

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Bug-fix release in the 2.4.x series.

This fix resolves an inconsistency of treatment of phase-difference and
scanner-calculated fieldmaps, relative to PEPolar and SyN. Fieldmaps in
orientations other than RAS were impacted.

* FIX: Reorient fieldmaps to RAS before estimating B-splines (354)

======================
Bug-fix release in the 2.4.x series.

Same fixes as 2.4.1, but this time for phase-difference and direct fieldmaps
we missed last time.

* FIX: Capture and report partial fieldmaps (351)

======================
Bug-fix release in the 2.4.x series.

This release provides improved tolerance (and debugging output)
for incomplete fieldmap inputs.

* FIX: Log incomplete fieldmaps, rather than erroring (341)
* ENH: Consistently log failures to form fieldmaps (343)

======================
New feature release in the 2.4.x series.

This release supports fMRIPrep 23.0.x and Nibabies 23.1.x.

* FIX: Reorient phase-encoding directions along with fieldmaps when preparing inputs to TOPUP (339)
* FIX: Correct overly-sensitive obliqueness check (335)