Smoldyn

- Changed default bounce interactions from the reflection method to the overlap method.
- Added PYTHON_VERSION as a compile option.
- Trying to reduce warnings from gitHub dependabot.
- Fixed bug in cmdsetreactionratemolcount command.

- Minor improvements to Tiff saving.
- Support for diffusion coefficient changes at surfaces.
- Improved error handling, command line input, and logging functionality.
- Added command line options with double hyphens.
- Fixed some issues that caused compiler warnings.
- Fixed a bug in the rate_rule statement.
- Increased standard string lengths from 256 to 512 characters, and long strings to 4096 characters.
- Fixed sphere reflection algorithm for the "bounce -2" setting.

- Fixed bug in which graphics were called by Python API even when turned off.
- Made it an error for command timing to have non-integer values for integer commands.
- Improved command timing so that command execution order is consistent.
- Added translatemol command and improved longrangeforce command.

- Added wheels for Python 3.11 (Windows, OSX).

- Allowed users to set reaction probability with Libsmoldyn and Python APIs

- Fixed command entry mid-simulation.
- Fixed command entry with timing in Python