- Fixed minor bugs. Excluded volume reactions now work well and added overlapping space hybrid simulation.
2.41
- Fixed several bugs that arose in v. 2.40, added tutorial section to User's Manual, and improved algorithm for excluded volume reactions.
2.40
- Lots of new features: rule-based modeling with BioNetGen, rule-based modeling with wildcards, variables and arithmetic in input files, fixed several more bugs in surface diffusion, several new commands.
2.39
- Fixed another important bug in surface diffusion. Quantitatively validated results. Accelerated virtual box assignment, which especially helps when molecules are unevenly distributed.
2.38
- Lots of minor bug fixes and feature additions. New features: fixmolcountrange commands, quit_at_end statement, reaction_intersurface statement, more versatile bounce and confspread reactions, works on older Mac systems.
2.37
- Fixed a major bug that affected diffusion of surface-bound molecules. In the process, sped up surface-bound diffusion. Also added support for single molecule tracking with serial number control and reaction logging.