Smriprep

====================
Hotfix release to address an issue recently encountered in fMRIPrep 20.1.0rc3.

* FIX: ``MultiLabel`` interpolations should not use ``float=True`` (196)

====================
Minor release in preparation for fMRIPrep 20.1.x series.
Features the new implementation of derivatives writers in NiWorkflows,
and additional flexibility to use previously computed results (in particular,
skull-stripped brains, and the new *fast-track* that allows skipping the
anatomical workflow in full, if all the expected derivatives are provided).
Most of the the bug-fixes correspond to amendments over these newly added
features.

* FIX: Convert LTA to ITK with nitransforms (188)
* FIX: Dismiss ``session`` entity on most of anatomical derivatives (193)
* FIX: Revise tissue probability maps connections and order (190)
* FIX: Make TPMs label ordering in ``io_spec.json`` consistent with workflow (179)
* FIX: Correct the ``dseg`` labeling from FSL FAST earlier (177)
* FIX: Ensure ``bias_corrected`` is single file, not list (174)
* ENH: Use new ``DerivativesDataSink`` from NiWorkflows 1.2.0 (183)
* ENH: Use FreeSurfer's canary to exit fast and with a clear message when the license is missing (182)
* ENH: Execute FSL FAST only with ``--fs-no-reconall`` (180)
* ENH: Enable anatomical fast track reusing existing derivatives (107)
* ENH: Add option to skip brain extraction (167)
* MAINT: Remove unused nwf interfaces (187)
* MAINT: Pin troublesome sphinx (175)
* MAINT: Update dependencies to be inline with fMRIPrep-20.1.x (173)

0.5.x Series
============

--------------------
Bug-fix release in the 0.5.x series.

This release fixes a bug where pre-run FreeSurfer that was not in alignment with the
T1w template generated by fMRIPrep could result in misaligned segmentation and mask
derivatives.

The bug is most likely to occur with pre-run FreeSurfer where multiple T1w images are found.
It is easily evident in the first figure in the anatomical section of the reports, and will
show heavily misaligned brain mask.

* FIX: Use t1w2fsnative_xfm to resample segmentations (201) effigies

-------------------------
Minor tweaks in preparation for fMRIPrep 20.0.0 release.

* ENH: Enable users to pass JSON filters to select subsets of data (143) bpinsard
* MAINT: Add ignore W503 in setup.cfg (165) oesteban

------------------------
A hotfix release updating dependencies

* PIN: Nibabel 3.0.1 and niworkflows 1.1.6 (166) mgxd

------------------------
A new minor release with a focus on improving internal handling and representations
of spatial references.

* RF: Update Spaces objects (164) mgxd
* ENH: Fix template keys output in normalization workflow, when cohort present (163) oesteban
* ENH: Integrate new infrastructure in NiWorkflows to handle spatial references (159) mgxd
* FIX: Improvements to the CircleCI workflow (162) oesteban
* CI: Update coverage (156) effigies

Pre- 0.5.x Series
=================