Binchicken

What's Changed
* Quality of life improvements by AroneyS in https://github.com/AroneyS/binchicken/pull/86
* Rename `--aviary-[gtdbtk, checkm2]-dir` args to `--aviary-[gtdbtk, checkm2]-db`
* Add database env variables to `ibis build` (SingleM, CheckM2, GTDBtk)
* Minimise standard workflow arguments
* Removed `--no-genomes` argument and made that the default
* Set max size to 50Gbp unless single-assembly
* Add Aviary build to Ibis build by AroneyS in https://github.com/AroneyS/binchicken/pull/89
* Snakefile improvements by AroneyS in https://github.com/AroneyS/binchicken/pull/93
* Update dependencies by AroneyS in https://github.com/AroneyS/binchicken/pull/94
* Improve genome loading by AroneyS in https://github.com/AroneyS/binchicken/pull/95
* Change name to binchicken by AroneyS in https://github.com/AroneyS/binchicken/pull/96

Breaking changes
* Name change to binchicken
* `--coassemble-output` now refers to `--output` dir from coassemble command instead of referring to the `coassemble` subfolder within that output dir
* Rename `--aviary-[gtdbtk, checkm2]-dir` args to `--aviary-[gtdbtk, checkm2]-db`
* Removed `--no-genomes` argument and made that the default
* Set max size to 50Gbp unless single-assembly


**Full Changelog**: https://github.com/AroneyS/binchicken/compare/v0.9.6...v0.10.0

What's Changed
* Add input to restrict coassembly samples by AroneyS in https://github.com/AroneyS/ibis/pull/71
* Add SingleM metapackage env var by AroneyS in https://github.com/AroneyS/ibis/pull/75
* Update Aviary env by AroneyS in https://github.com/AroneyS/ibis/pull/78
* Fix using max recovery samples with single assembly by AroneyS in https://github.com/AroneyS/ibis/pull/79


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.5...v0.9.6

What's Changed
* Fix split sra downloads by AroneyS in https://github.com/AroneyS/ibis/pull/59
* Prevent aviary recover output deletion by AroneyS in https://github.com/AroneyS/ibis/pull/61
* Update polars to v0.19 by AroneyS in https://github.com/AroneyS/ibis/pull/63
* Add more suffix options by AroneyS in https://github.com/AroneyS/ibis/pull/64
* Update SingleM by AroneyS in https://github.com/AroneyS/ibis/pull/65
* Skip single-ended on rerun by AroneyS in https://github.com/AroneyS/ibis/pull/67
* Fix QC by AroneyS in https://github.com/AroneyS/ibis/pull/68
* Update dependencies by AroneyS in https://github.com/AroneyS/ibis/pull/70


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.4...v0.9.5

What's Changed
* Switch to cores arg for snakemake by AroneyS in https://github.com/AroneyS/ibis/pull/48
* Remove bbduk qc filtering by AroneyS in https://github.com/AroneyS/ibis/pull/49
* Remove use of -- before target rule/file by AroneyS in https://github.com/AroneyS/ibis/pull/51
* Restrict polars threads in main by AroneyS in https://github.com/AroneyS/ibis/pull/53
* Switch to Fastp QC by AroneyS in https://github.com/AroneyS/ibis/pull/55
* Separate read downloading by AroneyS in https://github.com/AroneyS/ibis/pull/57


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.3...v0.9.4

What's Changed
* Deduplicate contig names in incoming genomes for unmapping by AroneyS in https://github.com/AroneyS/ibis/pull/40
* Add coassemble arg by AroneyS in https://github.com/AroneyS/ibis/pull/42
* Filter out samples not present in forward input by AroneyS in https://github.com/AroneyS/ibis/pull/45
* update kingfisher to v0.3.0 by AroneyS in https://github.com/AroneyS/ibis/pull/46


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.2...v0.9.3

What's Changed
* Better snakemake cluster support by AroneyS in https://github.com/AroneyS/ibis/pull/39


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.1...v0.9.2