Binchicken

Latest version: v0.12.6

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0.6.0

What's Changed
* Add argument to select specific coassemblies to unmap by AroneyS in https://github.com/AroneyS/ibis/pull/11
* Switch from pandas to polars (much faster!) by AroneyS in https://github.com/AroneyS/ibis/pull/12
* Add no-genomes argument for coassembly from scratch by AroneyS in https://github.com/AroneyS/ibis/pull/14


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.5.1...v0.6.0

0.5.1

What's Changed
* Add SRA-specific commands by AroneyS in https://github.com/AroneyS/ibis/pull/3
* Includes `--sra` argument to download SRA readsets
* Includes `--run-aviary` to attempt to run aviary locally
* Unable to implement properly due to https://github.com/snakemake/snakemake/issues/1998, potentially fixed with https://github.com/snakemake/snakemake/pull/1708. Aviary must be given as path to prebuilt conda env due to database setup requirements.


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.5.0...v0.5.1

0.5.0

What's Changed
* Improve unmapping by AroneyS in https://github.com/AroneyS/ibis/pull/8
* account for all clusters being filtered out by AroneyS in https://github.com/AroneyS/ibis/pull/9
* Fix evaluate errors with multiple coassemblies by AroneyS in https://github.com/AroneyS/ibis/pull/7
* Change name to Ibis by AroneyS in https://github.com/AroneyS/ibis/pull/10


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.4.8...v0.5.0

0.4.8

What's Changed
* Account for queried sequences returning no hits by AroneyS in https://github.com/AroneyS/cockatoo/pull/4
* Create iterate subcommand by AroneyS in https://github.com/AroneyS/cockatoo/pull/5
* Evaluate improvements by AroneyS in https://github.com/AroneyS/cockatoo/pull/6

**Full Changelog**: https://github.com/AroneyS/cockatoo/compare/v0.4.7...v0.4.8

0.4.7

- Restrict SingleM in parallel by assuming each takes 8 threads (SingleM does not honor threads contract)
- Update SingleM to v1.0.0beta2
- Add `-t CPUS` argument to Aviary commands to enable rules to use more than 8 threads (default)

**Full Changelog**: https://github.com/AroneyS/cockatoo/compare/v0.4.6...v0.4.7

0.4.6

- Account for empty inputs at each stage
- Add more tests

**Full Changelog**: https://github.com/AroneyS/cockatoo/compare/v0.4.5...v0.4.6

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