Chanjo

- Refactored to allow later python versions than 3.8 (pkg_resources to importlib, os.path and path.py to pathlib, distutils to shutil) [262](https://github.com/Clinical-Genomics/chanjo/pull/262)
- Updated actions to use python 3.11, add changelog reminder, add linting, format for linters [266](https://github.com/Clinical-Genomics/chanjo/pull/266)
- Update PyPi publish action to v1

Fixed
- Added `cryptography` module among the dependencies

Added
- github actions to publish the repo to PyPI and publish mkdocs on new release event
Changed
- Replace ruamel.yaml with pyyaml lib
- Updated GitHub actions
- Replaced alchy lib with sqlservice
- Unfreeze SQLAlchemy
Fixed
- Add missing brew path to GitHub action. It has been removed from PATH variable in Ubuntu
- Badges on README page

Fixed
- Freeze SQLAlchemy to a version <1.4 to avoid report creation crashing
- Fix links to documentation pages

Added
- docker-compose and Makefile
- adds link to publication

Added
- Dockerfile
- Added the Docker image build and push triggered by new releases
- Added github action running pytest and coveralls
- Software deployment instructions