Chanjo

Latest version: v4.7.2

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4.4.0

Added
- User can pass on file with row separated gene IDs for coverage calculation

4.3.0

Added
- added CLI commands

4.0.0

Version 4 slims down Chanjo quite a bit.

Added
- Lots of test, now 100% test coverage!
- Cascade rules to make sure stats records get deleted with parent sample

Changed
- Switched from Read the Docs to GitBook for documentation
- Updated demo

Removed
- Old database schema with explicit exon/gene records

3.4.1

Changed
- setup and tear down session in Flask app usage

3.4.0

Added
- All new transcript focused schema, generally activated by `--transcript` flag in CLI, this significantly reduces the database footprint and speeds up loading to only a few seconds for a full exome

3.3.1

Fixed
- properly report if a CLI subcommand is not found
- properly output results from "calculate region"
- show error message for unknown region ids
- fix sqlite issue when adding both `exon_obj` and `exon_id`

Changed
- make schema more strict about which columns need to exist

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