Changed - add indexes to models, especially to `exon_stat.metric` to speed up queries - speed up loading by front-loading existing exons (~7 min) - update resources bundled in the `bootstrap` command, now includes database with exons + slicing sites
Fixed - travis-ci setup for testing
3.2.1
Changed - do a rollback of failed transactions on "save"
Added - show progress of load command on "info" level
3.2.0
Changed - diagnostic yield function now accepts "exon_ids" explicitly and requires "sample_id" to be given
3.1.1
Fixed - fixed bug in SQL relationship between gene and transcript
3.1.0
Added - `sex` subcommand for guessing sex from BAM alignment, see 158
3.0.2
Fixed - chanjo API: restrict converter queries to distinct/unique rows