Chanjo

Fixed
- import from root init, use root logger

Code name: "Radical Red Panda"

This is a major new release. Please refer to the documentation for more details on what has been updated.

Added
- Add functionality to run sambamba from chanjo
- Add calulate command to get basic statistics from database
- Add link command to specifically link genomic elements
- Add db command to interface and perform maintainance on database

Removed
- Support for older versions of Chanjo

Fixed
- Changed way of logging
- Added proper logstream handler

Fixed
- Refactor ``EntryPointsCLI`` to allow for external subcommands
- Updated documentation to reflect Chanjo 2.x CLI

Changed
- use custom "multi command class" to load dynamic entry point plugins

Fixed
- some pylint improvements

Added
- New logging module accessible from the command line (-vvv)
- Add SQL schema drawing to "Code walkthrough"

Fixed
- Fix incorrectly references ID field in join statement (block_stats)