Lamindb

- ♻️ Replaced `ln.parse` with `Registry.from_values` [PR803](https://github.com/laminlabs/lamindb/pull/803) [sunnyosun](https://github.com/sunnyosun)
- 🎨 Auto-manage `RunInput` Registry [PR802](https://github.com/laminlabs/lamindb/pull/802) [falexwolf](https://github.com/falexwolf)

- ♻️ Make `zarr` optional [PR800](https://github.com/laminlabs/lamindb/pull/800) [falexwolf](https://github.com/falexwolf)

- ✨ Add `inspect` and `add_synonym` to `Registry` [PR797](https://github.com/laminlabs/lamindb/pull/797) [sunnyosun](https://github.com/sunnyosun)
- 🔧 Rename extra `nbproject` to `jupyter` and add `fcs` extra to docs [PR798](https://github.com/laminlabs/lamindb/pull/798) [falexwolf](https://github.com/falexwolf)
- 🚚 Move default storage location from `lndb/` to `.lamindb/` [PR796](https://github.com/laminlabs/lamindb/pull/796) [falexwolf](https://github.com/falexwolf)
- 🚸 `ln.Folder` becomes `ln.Tag` & directories now modeled as prefixes (as on S3) [PR794](https://github.com/laminlabs/lamindb/pull/794) [falexwolf](https://github.com/falexwolf)
- ♻️ Refactor storage code [PR792](https://github.com/laminlabs/lamindb/pull/792) [falexwolf](https://github.com/falexwolf) [Koncopd](https://github.com/Koncopd)

Features:

- 🚸 Idempotency across metadata records & data artifacts [FAQ](https://lamin.ai/docs/faq/idempotency) [PR783](https://github.com/laminlabs/lamindb/pull/783) [falexwolf](https://github.com/falexwolf)
- ✨ `add_synonym` & `map_synonyms` to enable, e.g., `add_synonym("MyGeneName")` [PR786](https://github.com/laminlabs/lamindb/pull/786) [sunnyosun](https://github.com/sunnyosun)
- ✨ Backed access for general HDF5 and zarr objects [PR781](https://github.com/laminlabs/lamindb/pull/781) [Koncopd](https://github.com/Koncopd)

Refactors:

- 🚸 Return records list from `.from_bionty` for multiple matches [PR789](https://github.com/laminlabs/lamindb/pull/789) [sunnyosun](https://github.com/sunnyosun)
- 🎨 Remove `lnhub-rest` from `lamindb-setup` [PR784](https://github.com/laminlabs/lamindb/pull/784) [bpenteado](https://github.com/bpenteado)
- 🔊 Move logging from stderr to stdout [PR776](https://github.com/laminlabs/lamindb/pull/776) [falexwolf](https://github.com/falexwolf)

Features:

- ✨ Enable `Registry.search()` and improved `Registry.lookup()` [PR771](https://github.com/laminlabs/lamindb/pull/771) [sunnyosun](https://github.com/sunnyosun)
- 🎨 Consolidate `lnschema_bionty` and upgrade to latest Bionty [PR775](https://github.com/laminlabs/lamindb/pull/775) [sunnyosun](https://github.com/sunnyosun)
- 🚸 Introduce `ln.settings.storage` to switch default storage [PR773](https://github.com/laminlabs/lamindb/pull/773) [falexwolf](https://github.com/falexwolf)
- 🚸 Return existing file if hash exists (idempotency) [PR772](https://github.com/laminlabs/lamindb/pull/772) [falexwolf](https://github.com/falexwolf)
- 🚸 `ln.settings` can now change logging verbosity levels [PR630](https://github.com/laminlabs/lamindb/pull/630) [falexwolf](https://github.com/falexwolf)

Refactors:

- ♻️ Refactor core schema methods and storage access [PR770](https://github.com/laminlabs/lamindb/pull/770) [falexwolf](https://github.com/falexwolf)
- 🐛 Make `User.name` nullable again [PR769](https://github.com/laminlabs/lamindb/pull/769) [falexwolf](https://github.com/falexwolf)
- ✅ Add integrity tests for migrations back [PR768](https://github.com/laminlabs/lamindb/pull/768) [falexwolf](https://github.com/falexwolf)