Lamindb

Latest version: v0.73.2

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0.69.0

What's Changed
* ✨ Add `latest_version` filter for `QuerySet` by falexwolf in https://github.com/laminlabs/lamindb/pull/1489
* ⬆️ Make get_stat_dir_s3 compatible with canonical storage policy (s3:ListBucket conditional on prefix/) by bpenteado in https://github.com/laminlabs/lamindb/pull/1490
* ✨ Integrate lamindb with git by falexwolf in https://github.com/laminlabs/lamindb/pull/1493
* ✨ Allow including simple related fields in `.df()` by falexwolf in https://github.com/laminlabs/lamindb/pull/1495
* 🩹 Handle OSError during delete by sunnyosun in https://github.com/laminlabs/lamindb/pull/1492
* ⬆️ Update bionty by sunnyosun in https://github.com/laminlabs/lamindb/pull/1496
* 🚸 Sync default git repo from hub by falexwolf in https://github.com/laminlabs/lamindb/pull/1497
* 🚚 Move transform settings into settings by falexwolf in https://github.com/laminlabs/lamindb/pull/1498
* 🚸 Upload script source code and environment during `ln.track()` by falexwolf in https://github.com/laminlabs/lamindb/pull/1499
* 🚚 Add `transform.description`, rename `transform.short_name` to `transform.key` by falexwolf in https://github.com/laminlabs/lamindb/pull/1500
* ✨ Return storage_idx in MappedCollection by Koncopd in https://github.com/laminlabs/lamindb/pull/1504
* ✨ Introduce `ln.finish()`, track run finish times, sync notebooks from within API by falexwolf in https://github.com/laminlabs/lamindb/pull/1501
* ♻️ Add a json field to `Run` by falexwolf in https://github.com/laminlabs/lamindb/pull/1505


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.68.2...0.69.0

0.68.2

What's Changed
* Fix old style URLs by Zethson in https://github.com/laminlabs/lamindb/pull/1485
* 🚚 Rename `lnschema_lamin1` to `wetlab` by falexwolf in https://github.com/laminlabs/lamindb/pull/1487
* 🚸 More sensible transform types by falexwolf in https://github.com/laminlabs/lamindb/pull/1486
* 🚚 Move transform & run artifacts into cache before uploading by falexwolf in https://github.com/laminlabs/lamindb/pull/1488


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.68.1...0.68.2

0.68.1

What's Changed
* ♻️ Refactor transform update dialogue, more tests by falexwolf in https://github.com/laminlabs/lamindb/pull/1471
* 🩹 Pin s3fs by Koncopd in https://github.com/laminlabs/lamindb/pull/1472
* 📝 Improve docs and make some methods private for MappedCollection by Koncopd in https://github.com/laminlabs/lamindb/pull/1473
* ♻️ Type UPathStr & move .dev to .core in lamindb-setup by falexwolf in https://github.com/laminlabs/lamindb/pull/1475
* ♻️ Refactor tests by sunnyosun in https://github.com/laminlabs/lamindb/pull/1477
* ♻️ Move generic hashing and storage utilities into `lamindb-setup` by bpenteado in https://github.com/laminlabs/lamindb/pull/1476
* 🚚 Replace `instance.identifier` with `instance.slug` by falexwolf in https://github.com/laminlabs/lamindb/pull/1478
* 🚸 Soft-deprecate `lamin load` in favor of `lamin connect`, require `ln.connect()` unless `auto_connect` is enabled by falexwolf in https://github.com/laminlabs/lamindb/pull/1480
* 🚸 Enable transfer artifacts from local instance to remote instance by sunnyosun in https://github.com/laminlabs/lamindb/pull/1479
* 📝 Refactor intro by falexwolf in https://github.com/laminlabs/lamindb/pull/1482
* 🚸 Disable delete data from non-default storage by sunnyosun in https://github.com/laminlabs/lamindb/pull/1484
* 🚸 Restore `auto_connect=True` on `lamin init` by falexwolf in https://github.com/laminlabs/lamindb/pull/1483


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.68.0...0.68.1

0.68.0

What's Changed
* ♻️ Thread-safe multi-instance mode by falexwolf in https://github.com/laminlabs/lamindb/pull/1424
* 📌 Pin nbstripout for now by Koncopd in https://github.com/laminlabs/lamindb/pull/1429
* ⬆️ Upgrade anndata by Koncopd in https://github.com/laminlabs/lamindb/pull/1427
* ⬆️ Upgrade fsspec[s3,gs] by Koncopd in https://github.com/laminlabs/lamindb/pull/1426
* 🐛 Fix upload by falexwolf in https://github.com/laminlabs/lamindb/pull/1430
* 📝 Updated bionty landing page by sunnyosun in https://github.com/laminlabs/lamindb/pull/1433
* ♻️ Simplify transfer by falexwolf in https://github.com/laminlabs/lamindb/pull/1425
* :pencil2: Fix a few minor doc issues by Zethson in https://github.com/laminlabs/lamindb/pull/1436
* A few doc improvements by Zethson in https://github.com/laminlabs/lamindb/pull/1438
* :sparkles: Unique validation values by Zethson in https://github.com/laminlabs/lamindb/pull/1440
* :art: Remove discussion points from key FAQ by Zethson in https://github.com/laminlabs/lamindb/pull/1441
* 🐛 Fix zarr saving for hosted instances by Koncopd in https://github.com/laminlabs/lamindb/pull/1445
* ♻️ Draft transform settings by falexwolf in https://github.com/laminlabs/lamindb/pull/1449
* ⚡️ A way to improve parallel sampling for Collection.mapped by Koncopd in https://github.com/laminlabs/lamindb/pull/1448
* 🎨 Decouple features from Artifact construction by sunnyosun in https://github.com/laminlabs/lamindb/pull/1434
* ⬆️ Update core submodule by sunnyosun in https://github.com/laminlabs/lamindb/pull/1453
* 🚸 Simplify features linking by sunnyosun in https://github.com/laminlabs/lamindb/pull/1455
* ⬆️ Update core submodule by sunnyosun in https://github.com/laminlabs/lamindb/pull/1459
* 🎨 Use `var_field` for `AnnData` by sunnyosun in https://github.com/laminlabs/lamindb/pull/1458
* 🔊 Raise warning instead of error for artifact construction from df an… by sunnyosun in https://github.com/laminlabs/lamindb/pull/1461
* ✨ Rework Collection.mapped by Koncopd in https://github.com/laminlabs/lamindb/pull/1460
* ♻️ Refactor features by sunnyosun in https://github.com/laminlabs/lamindb/pull/1463
* 🔥 Remove `lamin track` by falexwolf in https://github.com/laminlabs/lamindb/pull/1462
* 🚚 Rename `.dev` to `.core` by falexwolf in https://github.com/laminlabs/lamindb/pull/1464
* 🔈 Better logging for update version dialogue by falexwolf in https://github.com/laminlabs/lamindb/pull/1465
* 📝 Simplify intro by sunnyosun in https://github.com/laminlabs/lamindb/pull/1466
* 🐛 Fix `lamin stage` by falexwolf in https://github.com/laminlabs/lamindb/pull/1467
* ♻️ Pass `access_token` in `artifact.save` by Koncopd in https://github.com/laminlabs/lamindb/pull/1454
* ♻️ Add ability to pass through access_token by falexwolf in https://github.com/laminlabs/lamindb/pull/1468
* ⬆️ Released sub modules by sunnyosun in https://github.com/laminlabs/lamindb/pull/1469
* ⬆️ Update cli pinning by sunnyosun in https://github.com/laminlabs/lamindb/pull/1470


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.67.3...0.68.0

0.67.3

What's Changed
* 🎨 Transfer collection.artifacts by sunnyosun in https://github.com/laminlabs/lamindb/pull/1405
* 🚸 Account for run not yet being saved by falexwolf in https://github.com/laminlabs/lamindb/pull/1404
* ♻️ Use folders instead of buckets for default storages by falexwolf in https://github.com/laminlabs/lamindb/pull/1413
* ♻️ Refactor storage settings by falexwolf in https://github.com/laminlabs/lamindb/pull/1414
* ✨ Add `add_to_version_family` by sunnyosun in https://github.com/laminlabs/lamindb/pull/1408
* ✨ Enable to use hosted storage on S3 by falexwolf in https://github.com/laminlabs/lamindb/pull/1416
* 🚚 Import `bionty` instead of `lnschema-bionty` by sunnyosun in https://github.com/laminlabs/lamindb/pull/1415
* 🏗️ Run lamindb in multi-instance mode by falexwolf in https://github.com/laminlabs/lamindb/pull/1417
* 🚸 Also show hidden artifacts in data lineage by falexwolf in https://github.com/laminlabs/lamindb/pull/1418
* ✨ Enable to change the default database by falexwolf in https://github.com/laminlabs/lamindb/pull/1419
* ⬆️ Release submodules by sunnyosun in https://github.com/laminlabs/lamindb/pull/1421
* 📝 Fix docs by sunnyosun in https://github.com/laminlabs/lamindb/pull/1422
* 🎨 Make `Collection.save()` ACID by falexwolf in https://github.com/laminlabs/lamindb/pull/1410
* ♻️ Use Click for CLI by falexwolf in https://github.com/laminlabs/lamindb/pull/1420
* 🐛 Cache anon state by falexwolf in https://github.com/laminlabs/lamindb/pull/1423


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.67.2...0.67.3

0.67.2

What's Changed
* ✨ Enable staging notebooks & code using the CLI by falexwolf in https://github.com/laminlabs/lamindb/pull/1403


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.67.1...0.67.2

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