Lamindb

Latest version: v0.73.2

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0.3.3

What's Changed
* ✨ Populate `dtransform_in` by falexwolf in https://github.com/laminlabs/lamindb/pull/153
* 🐛 Fix population of `dtransform` by falexwolf in https://github.com/laminlabs/lamindb/pull/155
* :bento: Add scrnaseq cellranger dataset by bpenteado in https://github.com/laminlabs/lamindb/pull/151
* ♻️ Update pipeline ingestion to `lnschema_core` 0.5.0 by bpenteado in https://github.com/laminlabs/lamindb/pull/154
* ⬆️ Upgrade to `lnschema_core` 0.5.1 by falexwolf in https://github.com/laminlabs/lamindb/pull/156
* ⬆️ Updated dependencies by sunnyosun in https://github.com/laminlabs/lamindb/pull/157
* ⬆️ Updated to sqm 0.0.7 by sunnyosun in https://github.com/laminlabs/lamindb/pull/159
* ⬆️ Updated to bionty 0.2.2 by sunnyosun in https://github.com/laminlabs/lamindb/pull/160
* ✨ Use cell_marker feature model for flow data by sunnyosun in https://github.com/laminlabs/lamindb/pull/161
* 👷 Allow stripping notebooks again, upgrade `nbproject_test` by falexwolf in https://github.com/laminlabs/lamindb/pull/162


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.3.2...0.3.3

0.3.2

What's Changed
* ♻️ Refactor `lnbfx` integration by bpenteado in https://github.com/laminlabs/lamindb/pull/149
* ⬆️ Updated dependencies by sunnyosun in https://github.com/laminlabs/lamindb/pull/152


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.3.1...0.3.2

0.3.1

What's Changed
* 🚧 Temporary solution to extend modules by sunnyosun in https://github.com/laminlabs/lamindb/pull/150


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.3.0...0.3.1

0.3.0

What's Changed
* 🏗️ Separate settings into user vs. instance and one file per instance by fredericenard in https://github.com/laminlabs/lamindb/pull/83
* 🚸 Offer manual way of completing a migration by falexwolf in https://github.com/laminlabs/lamindb/pull/86
* ✨ Enable annotating features of dobjects by sunnyosun in https://github.com/laminlabs/lamindb/pull/81
* 🚚 Move db API from admin to dev by falexwolf in https://github.com/laminlabs/lamindb/pull/87
* 🎨 Use modular schema structure by falexwolf in https://github.com/laminlabs/lamindb/pull/88
* 🔼 Upgrade to schema 0.2.1 by falexwolf in https://github.com/laminlabs/lamindb/pull/89
* ✨ Annotate biometa when annotating genes by sunnyosun in https://github.com/laminlabs/lamindb/pull/90
* 🔥 Switched logger to use lamin-logger by sunnyosun in https://github.com/laminlabs/lamindb/pull/92
* :green_heart: Add time out of 6 min to github actions by Koncopd in https://github.com/laminlabs/lamindb/pull/93
* 🚸 Let the CLI have actual subcommands by falexwolf in https://github.com/laminlabs/lamindb/pull/96
* 🍱 Adapted to `lndb-schema-biology` `0.1.1` by sunnyosun in https://github.com/laminlabs/lamindb/pull/97
* 🚚 Move CLI code to `lndb-cli` by falexwolf in https://github.com/laminlabs/lamindb/pull/98
* 🚚 Account for table construction in lndb-cli by falexwolf in https://github.com/laminlabs/lamindb/pull/99
* ⬆️ Upgrade to lndb-cli 0.2.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/101
* 🆙 Upgrade `lndb_setup` to 0.3.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/102
* 🔥 Moved readout vocab to bioreader by sunnyosun in https://github.com/laminlabs/lamindb/pull/103
* ✨ Enable sharing dobjects & instances in the hub by fredericenard in https://github.com/laminlabs/lamindb/pull/69
* ♻️ Refactor sharing on the hub by falexwolf in https://github.com/laminlabs/lamindb/pull/104
* 🚚 Move out `lndb_hub` by falexwolf in https://github.com/laminlabs/lamindb/pull/105
* ⬆️ Upgrade to `lndb_schema_core` 0.2.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/106
* 📝 Improve `get-started` and `collaborate` tutorials by falexwolf in https://github.com/laminlabs/lamindb/pull/108
* 📝 Re-write landing page by falexwolf in https://github.com/laminlabs/lamindb/pull/109
* 🚧 Annotate features during ingestion by sunnyosun in https://github.com/laminlabs/lamindb/pull/110
* ⬆️ Upgrade to `lamindb-schema` 0.3.1 by falexwolf in https://github.com/laminlabs/lamindb/pull/111
* 📝 Add a problem statement by falexwolf in https://github.com/laminlabs/lamindb/pull/112
* ✨ Query and update metadata by sunnyosun in https://github.com/laminlabs/lamindb/pull/113
* 🩹 Some fixes of ingesting in-memory dobjects and an analysis draft by falexwolf in https://github.com/laminlabs/lamindb/pull/114
* 🎨 Prettified and reordered nbs, renamed `load` to `load.entity` by sunnyosun in https://github.com/laminlabs/lamindb/pull/115
* ⬆️ Upgrade to `lndb_setup` 0.4.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/116
* 📝 Prettify user mentions in tutorials & guides by falexwolf in https://github.com/laminlabs/lamindb/pull/117
* ✨ Allow ingesting fcs files and querying genes by sunnyosun in https://github.com/laminlabs/lamindb/pull/118
* 📝 Polish `get-started` & `query-data` by falexwolf in https://github.com/laminlabs/lamindb/pull/119
* 📝 Polish the 4 key tutorial pages by falexwolf in https://github.com/laminlabs/lamindb/pull/121
* 📝 Polish the `introspect` tutorial by falexwolf in https://github.com/laminlabs/lamindb/pull/122
* ⬆️ Upgrade to `lndb_setup` 0.4.2 by falexwolf in https://github.com/laminlabs/lamindb/pull/123
* 👷 Cleaner CI environment switching by falexwolf in https://github.com/laminlabs/lamindb/pull/125
* 🚚 Renamed `meta.annotate` to `do.link` by sunnyosun in https://github.com/laminlabs/lamindb/pull/126
* ⬆️ Upgrade to `lndb_schema_core` 0.3.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/127
* :arrow_up: Upgrade to lndb_setup 0.5.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/128
* 🚚 Migrate `bioreader` to `bioreadout` by sunnyosun in https://github.com/laminlabs/lamindb/pull/129
* ✨ New readout_type table, registered species by sunnyosun in https://github.com/laminlabs/lamindb/pull/130
* ⚡ Ingest genes properly by sunnyosun in https://github.com/laminlabs/lamindb/pull/131
* 👽 Adapt to `lndb-schema-bionty 0.1.4` by sunnyosun in https://github.com/laminlabs/lamindb/pull/134
* 📝 Updated docs by sunnyosun in https://github.com/laminlabs/lamindb/pull/135
* ✨ Integrate bioinformatics pipline runs by bpenteado in https://github.com/laminlabs/lamindb/pull/133
* 🚚 Rename schema modules and bioinformatics module by falexwolf in https://github.com/laminlabs/lamindb/pull/136
* ✨ Track storage root location by fredericenard in https://github.com/laminlabs/lamindb/pull/137
* ⬆️ Upgrade core schema to v0.4.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/138
* ✨ Autogenerate `query`, `update` and `delete` functions by sunnyosun in https://github.com/laminlabs/lamindb/pull/139
* 💄 Added logging to update and delete by sunnyosun in https://github.com/laminlabs/lamindb/pull/141
* ⬆️ Upgrade lndb-hub to v0.5.0 by fredericenard in https://github.com/laminlabs/lamindb/pull/140
* ♻️ Cleaned up and added a mouse dataset by sunnyosun in https://github.com/laminlabs/lamindb/pull/142
* 🚚 Renamed `id` to `key` in `update` and `delete` APIs by sunnyosun in https://github.com/laminlabs/lamindb/pull/143
* ⬆️ Upgrade to lnbfx 0.2.0 by falexwolf in https://github.com/laminlabs/lamindb/pull/144
* 🚚 Renamed `FeatureModel` to `LinkFeatureModel` by sunnyosun in https://github.com/laminlabs/lamindb/pull/145
* Use id to reference storage by fredericenard in https://github.com/laminlabs/lamindb/pull/146
* ✏️ Fixed typo in check versions by sunnyosun in https://github.com/laminlabs/lamindb/pull/147
* 🏗️ Make tables within schema modules configurable by falexwolf in https://github.com/laminlabs/lamindb/pull/148


**Full Changelog**: https://github.com/laminlabs/lamindb/compare/0.1.2...0.3.0

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