- updated sundials to 4.1.0 - updated SuiteSparse to 5.4.0 - added generic implementations for symbolic expressions that were sparse matrix vector products
Bugfixes:
- fixed return value of `rz` when no data is provided.
0.9.5
Not secure
Features / improvements:
- allow python installations without compilation of c++ extension - improvements to ExpData <-> pandas.DataFrame interface - allow generation of matlab models from python - implement CLI interface for PEtab - improve computation time for conservation laws from pysb import
Bugfixes:
- Fix sign in undamped Newton step.
Maintenance:
- use newer CI images
0.9.4
Not secure
Minor fixes only: - fix(core) Get solver diagnostics for first(last) timepoint (588) (Closes 586) - fix(ci) Fix autodeploy (Closes 589)
0.9.3
**CRITICAL FIXES** - **fix(python) fix symbolic computations for adjoint (583)**
**Features** - feature(python) Check for matching AMICI versions when importing model (Closes 556). Set exact AMICI version as model package requirement. - feature(core) Add option to rethrow AMICI exception (Closes 552) - feature(python) Redirect C/C++ output in stdout is redirected (e.g. in ipython notebooks) (Closes 456)
**Minor fixes** - fix(python) Fix doc and rename sys_pipes to something more meaningful - fix(ci) Fix premature exit of scripts/runNotebook.sh - fix(deploy) Update pyenv shims to find twine
0.9.2
Not secure
Bugfixes:
- fixes a critical bug in the newton solver - fixes multiple bugs in sbml import for degenerate models, empty stoichiometry assignments and conversion factors - improved error messages for sbml import - 560 - 557 - 559
0.9.1
Not secure
Features / improvements:
- make pure steadystate results available as `rdata['x_ss']` and `rdata['sx_ss'] ` - add option to specify integration tolerances for the adjoint problem via `atolB` and `rtolB`
Bugfixes:
- improved conservation law identification to also account for constant species. - fixed a bug where simulation results were written into results of the second newton solver attempt - fixed an openMP related warning
Maintenance:
- attempt to fix automatic deploy to pypi via travis