Amici

New:
* Allow specifying maximum integration time via
`amici::Solver::setMaxTime()` (1530)
* Py: Add `failfast` and `num_threads` argument to `simulate_petab`
(1528, 1524)
* Enable typehints / static type checking for AMICI-generated model modules
(1514) (`amici.ModelModule`, available with Python>=3.8)

Fixes:
* Python: Fix unused argument `generate_sensitivity_code` in `pysb2amici`
(1526)
* Python: Fix C(++) stdout redirection which could have let to deadlocks in
exotic situations (1529)
* Py: Fixed deprecation warning (1525)
* Py: Proper typehints for SWIG interface (1523), enabling better static type
checking and IDE integration (available with Python>=3.9)
* C++: Fixed clang compiler warning (1521)
* C++: Fix inherited variadic ctor in exception class (1520)
* PEtab: More informative output for unhandled species overrides (1519)
* Return SbmlImporter from PEtab model import (1517)

Fixes:
* Fix "maybe-uninitialized" compiler warning (1495)
* Fix substitution of expressions in `drootdt_total (1512)
* C++: Fix serialization and == operator (1493)
* C++: Avoid `w` in `root` and `stau` headers (refactor) (1503)

Documentation:
* Updated OpenBLAS Windows installation instructions (1496)
* Updated how-to-cite to Bioinformatics paper (1499)
* Updated list of papers using AMICI (1509)

Other:
* Remove sllh computation from `petab_objective.simulate_petab` (1498)
* Add __main__.py to Python package to provide info on AMICI installation
via `python -m amici` (1500)

Fixes:
* Fixed serialization bug (1490)

New:
* Construction of condition specific plist for parameter mappings (1487, 1488)
* **Add support for error residuals** (1489)

Fixes:
* Fixed initial state sensitivities in adjoint preequilibration (1468)
* Fixed various model import / parameter mapping issues (1469, 1473, 1475)

New:
* New AMICI releases will automatically trigger releases at
https://biosimulators.org/simulators/amici/latest
* Transparent logo

New features:
* **Python import now supports SBML Events** (1443)
* Implement support for compilation without sensitivities (1454)

Fixes:
* Issue 1446: Check whether constant parameters are valid targets (1450)
* Issue 1422: Fix Steadystate solver failing if preequilibration starts in
steadystate (1461)
* Issue 1401: Ensure diagnostics variables in ReturnData are always of
expected length (1438, 1447)
* Fix FIM approximation for parameter dependent sigma (1441)
* Fix invalid SBML in PEtab/PySB import (1433)
* Fix: No context for inspect.getouterframes (1432)

Documentation:
* Added this CHANGELOG
* Added feature request issue template (1437)
* Updated reference list (1430)
* Overhauled experimental conditions notebook (1460)

CI:
* Test Matlab interface on GHA (1451)
* Include componentTags in SBML test suite output (1462)
* Split SBML semantic test suite into multiple jobs (1452)
* Fix Crauste ref val, fixes 1458 (1459)

Misc:
* Various cleanup (1465, 1448, 1455)
* Micro-optimize SUNMatrixWrapper::transpose (1439)
* Remove constant triggers from roots in Heaviside (1440)

Breaking changes:
* AMICI requires Python>=3.7
* Updated package installation (PEP517/518):
Creating source distributions requires https://github.com/pypa/build (#1384)
(but now handles all package building dependencies properly)

Features:
* More flexible state reinitialization (1417)

Updated dependencies:
* Upgrade to sundials 5.7.0 (1392)

Fixes:
* Python: account for heaviside functions in expressions (1382)
* Python: allow loading of existing models in import_petab_problem (1383)
* Python: Don't override user-provided compiler/linker flags (1389)
* Python: PEtab import reinitialization fixes (1417)
* Python: Fix PEtab observables for pysb models (1390)
* Python: Substitute expressions in event condition expressions (1404)
* Python: Unspecified initial states in PEtab conditions table default to SBML initial value (1397)
* C++: Fix timepoint out of bounds access (1402)
* C++: Fix exported CMake config (1388)
* Fixed Dockerfile: add python3-venv (1398, 1408)

Other:
* Slim exported swig interface (1425)
* Updated documentation
* Getting started tutorial (1423)
* List supported SBML test tags (1428)
* Add AMICI C++/Python/Matlab feature comparison (1409)
* ...
* Various minor CI improvements
* ...