Amici

Latest version: v0.28.0

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0.8.1

- [all] **critical** Fix long standing bugs in solving steadystate problems (including preequilibration) (471)
- [all] Fix AmiVector constructor from std::vector (471)
- [python] Reenable Solver and Model copy constructors
- Update documentation

0.8.0

- replaced symengine by sympy for symbolic processing in python *which fixes several critical bugs* that were due to bugs in symengine (467)

0.7.13

- fixes a critical bug in objective function computation for models compiled using `sbml2amici` and `pysb2amici` that was introduced in v0.7.12
- fixes a critical bug in sensitivity computation when`model.reinitializeFixedParameterInitialStates` was set to true
- readds the python interface to the ExpData copy constructor that was inadvertently removed in 0.7.12 and streamlines the respective convenience wrapper to provide access to the full range of constructors.

0.7.12

- fixed a critical bug in `amici.constructEdataFromDataFrame`
- enabled multithreaded simulation of multiple experiments (requires compilation with openMP)
- modularized sbml import and added pysb import

0.7.11

- [python] Added numpy and python wrappers that provide a more user friendly python API
- [python] Enable import of SBML models with non-float assignment rules
- [python] Enable handling of exceptions in python
- [python] Enable nativ python access to std::vector data-structures
- [core] Provide an API for more fine-grained control over sensitivity tolerances and steady-state tolerances
- [core] Provide an API to specify non-negative state variables (this feature is still preliminary)

0.7.10

- Fixed python SBML import `log()` issues (412)

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