Fwdpy11

Latest version: v0.24.3

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0.1.2

This release has a few bug fixes, but the main high points are:

1. Better integration with Numpy via Python's buffer protocol. This means better speed
2. Lots of new documentation.

0.1.1

Bug fixes:
---------------------
* Fixed bug in :func:`fwdpy11.sampling.DataMatrix.selected` that returned wrong data in best case scenario and could
have caused crash in worst case.
(https://github.com/molpopgen/fwdpy11/commit/e715fb74472555aa64e1d894563ec218ebba1a97).
* Fix bug recording fixation times. If a population was evolved multiple times, fixation times from the later rounds of
evolution were incorrect.
(https://github.com/molpopgen/fwdpy11/commit/9db14d8b3db1c744045e20bfc00ce37e7fb28dfb)
* Fix issue 1, related to fixations in quantitative trait sims. (https://github.com/molpopgen/fwdpy11/commit/6a27386498f056f0c4cc1fc6b8ea12f2b807636c)
* The "label" field of a diploid is now initialized upon constructing a population.

API and back-end changes:
------------------------------------------
* Added :func:`fwdpy11.sampling.matrix_to_sample` and :func:`fwdpy11.sampling.separate_samples_by_loci`. (https://github.com/molpopgen/fwdpy11/commit/i639c8de999679140fad6a976ff6c1996b25444aa)
* Custom stateless fitness/genetic value calculations may now be implemented with a minimal amount of C++ code. See
:ref:`customgvaluecpp`.
(https://github.com/molpopgen/fwdpy11/commit/a75166d9ff5471c2d18d66892f9fa01ebec5a667)
* Custom fitness/genetic value calculations now allowed in pure Python, but they are quite slow (for now). See
:ref:`customgvalues`. (https://github.com/molpopgen/fwdpy11/commit/5549286046ead1181cba684464b3bcb19918321e)
* Stateful trait value models enabled for qtrait sims. (https://github.com/molpopgen/fwdpy11/commit/161dfcef63f3abf28ad56df33b84a92d87d7750f)
* Refactor evolution functions so that stateful fitness models behave as expected. Enable compiling in a debug mode.
Fix bug in operator== for diploid type. (https://github.com/molpopgen/fwdpy11/commit/a726c0535a5176aab1df5211fee7bf0aeba5054b)
* fwdpy11.util added, providing :func:`fwdpy11.util.add_mutation`. (https://github.com/molpopgen/fwdpy11/commit/17b92dbe61ee85e2e60211e7dc0ed507a70dbd64)
* Simulations now parameterized using classes in fwdpy11.model_params. (https://github.com/molpopgen/fwdpy11/commit/18e261c8596bf63d2d4e1ef228effb87397b793e) and (https://github.com/molpopgen/fwdpy11/commit/eda7390adb9a98a5d96e6557ba1003488ebac511)
* Added multi-locus simulation of quantitative traits.(https://github.com/molpopgen/fwdpy11/commit/fcad8de9d37bcef5a71ba6d26b4e40e1b67b1993)
* Refactoring of type names. (https://github.com/molpopgen/fwdpy11/commit/632477c7b7592d956149a0cf44e4d26f2a67797e)
* Refactoring internals of single-region fitnes/trait value typess. (https://github.com/molpopgen/fwdpy11/commit/d55d63631d02fdb2193940475dbcffaa201cf882)
* Allow selected mutations to be retained in fwdpy11.wright_fisher.evolve_regions_sampler_fitness. (https://github.com/molpopgen/fwdpy11/commit/dcc1f2f6555eeada669efef8317f446e3cd0e46a)

0.1.post4

I think we finally have a robust setup.py for OS X/clang and OS X/gcc.

0.1.post3

Now GCC is required on OS X.

Debugging symbols are not generated. This results in much smaller library files.

0.1.post2

Allows OS X builds via clang/llvm.

0.1

Corresponds to first PyPi release.

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