Gseapy

What's Changed
* Add `ax` keyword to `dotplot`, `barplot`
* fix: throw error for empty gene lists in enrich by quasi-deus in https://github.com/zqfang/GSEApy/pull/278
* Update plot.py by byemaxx in https://github.com/zqfang/GSEApy/pull/281



**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.1.3...v1.1.4

What's Changed
* Add Python 3.12 wheels
* Improve Dotplot usage
* Update on singlecell example nb to be compatible with missing edges and isolated nodes by Alireza-Majd in https://github.com/zqfang/GSEApy/pull/263


**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.1.2...v1.1.3

What's Changed
* Fixed to run prerank without error with rnk (type(pd.Series.name) == str) by 136s in https://github.com/zqfang/GSEApy/pull/240
* align gene hits track in TracePlot (fixes zqfang/GSEApy248) by 136s in https://github.com/zqfang/GSEApy/pull/249
* Fixed key error in rnk file with duplicated gene names 251


**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.1.1...v1.1.2

What's Changed
* Corrected odds ratio formula, 237 by 136s in https://github.com/zqfang/GSEApy/pull/238

* Refactor internal data parser for files .rnk, .gct. etc

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.1.0...v1.1.1

What's Changed


New:
* Add `gsva` module: This is the Rust implementation of `GSVA` algorithm. 226

Fixed:

* 211, Now, `pheno_pos` and `pheno_neg` can define with

python
from gseapy import GSEA

gs = GSEA(data="./tests/extdata/Leukemia_hgu95av2.trim.txt",
gene_sets='KEGG_2016',
classes = "./tests/extdata/Leukemia.cls"
)
set here
gs.pheno_pos = ...
gs.pheno_neg = ...
gs.run()


* improvement for `barplot` 224. Specify colors for each group explicity
python
barplot( ...., color= {'KEGG_2021_Human': 'salmon', 'MSigDB_Hallmark_2020':'darkblue'})



**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.6...v1.1.0

What's Changed
* Fix issue: The gseaplot bar hits aligned incorrectly that happened in v1.0.5, 222
* Add Msigdb API, now mouse symbol/entrze could be download easy, 204, check the docs [here](https://gseapy.readthedocs.io/en/latest/gseapy_example.html#Msigdb-API)
* Add `MacOS-Arm64` binary
* A few other minor issues

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.5...v1.0.6