Gseapy

Latest version: v1.1.7

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0.10.7

- Fix t_test statistics, 141
- Fix a critical bug in phenotype permutation percedure (the permutation for null distribution is accidently not correct for phenotype shuffling proceducre) 140. Please update your results using v0.10.7 (only affects `phenotype permutation`)
- Add odds ratio output to Enrichr output
- minor docs improvement

0.10.3

Not secure
Fix Enrichr URL error. 110 , 111

0.10.1

Not secure
This is a major update.

* Fixed a critical bug in NES calculation 105.
* A few minor improvements for a better and cleaner interactive computing experience
* add a new ranking method: genes with absolute value of signal to noise ( `abs_signal_to_noise` or `abs_s2n`)
* change cache directory from `~/.gseapy` to `~/.cache/gseapy`.

0.9.18

Not secure
* Drop dependency of bs4
* Performance improvement for large dataset: use joblib instead of multiprocessing 92, 70
* Fixed random seeding. Now FDR results are reproducible 95, 70
* Improve heatmap ticks layout

0.9.13

Not secure
Bump version

0.9.12

Not secure
Enrichr`` module:

1. Support modEnrich (https://amp.pharm.mssm.edu/modEnrichr/) .
Add `organism` argument. Now, Human, Mouse, Fly, Yeast, Worm, Fish are supported.
2. background argument bug fixed, 66 .
Now, background type could be: list, tuple, set, Series, ndarray, int, a txt file or biomart dataset name.

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