Gseapy

Latest version: v1.1.7

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1.1.1

What's Changed
* Corrected odds ratio formula, 237 by 136s in https://github.com/zqfang/GSEApy/pull/238

* Refactor internal data parser for files .rnk, .gct. etc

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.1.0...v1.1.1

1.1.0

What's Changed


New:
* Add `gsva` module: This is the Rust implementation of `GSVA` algorithm. 226

Fixed:

* 211, Now, `pheno_pos` and `pheno_neg` can define with

python
from gseapy import GSEA

gs = GSEA(data="./tests/extdata/Leukemia_hgu95av2.trim.txt",
gene_sets='KEGG_2016',
classes = "./tests/extdata/Leukemia.cls"
)
set here
gs.pheno_pos = ...
gs.pheno_neg = ...
gs.run()


* improvement for `barplot` 224. Specify colors for each group explicity
python
barplot( ...., color= {'KEGG_2021_Human': 'salmon', 'MSigDB_Hallmark_2020':'darkblue'})



**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.6...v1.1.0

1.0.6

What's Changed
* Fix issue: The gseaplot bar hits aligned incorrectly that happened in v1.0.5, 222
* Add Msigdb API, now mouse symbol/entrze could be download easy, 204, check the docs [here](https://gseapy.readthedocs.io/en/latest/gseapy_example.html#Msigdb-API)
* Add `MacOS-Arm64` binary
* A few other minor issues

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.5...v1.0.6

1.0.5

New Features:

- support user-defined background for Enrichr Web Service (on line mode)
- multiple gseaplot. refer to examples. 205
- Enrichr module: add `Combined Score` output in the local mode

Bug Fixed
- minor issues, 195, 194

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.4...v1.0.5

1.0.4

Major:
* Fixed critical bug 190. The wrong output of Lead genes and heatmap are fixed when call gsea with permutation_type = 'gene_set'
Others
* dotplot visualization improvement
* add new keyword `correl_norm_type` to `ssgsea()`

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.3...v1.0.4

1.0.3

Fix issues with

- biomart return status 182
- enrichr gmt output name 181
- logging's log file 180

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.2...v1.0.3

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