* switch to samtools 0.1.18 * various bugfixes * removed references to deprecated 'samtools pileup' functionality * AlignedRead.tags now returns an empty list if there are no tags. * added pnext, rnext and tlen
0.5
===========
* switch to samtools 0.1.16 and tabix 0.2.5 * improved tabix parsing, added vcf support * re-organized code to permit linking against pysam * various bugfixes * added Samfile.positions and Samfile.overlap
0.4
Not secure
===========
* switch to samtools 0.1.12a and tabix 0.2.3 * added snp and indel calling. * switch from pyrex to cython * changed handling of samtools stderr * various bugfixes * added Samfile.count and Samfile.mate * deprecated AlignedRead.rname, added AlignedRead.tid
0.3
Not secure
===========
* switch to samtools 0.1.8 * added support for tabix files * numerous bugfixes including * permit simultaneous iterators on the same file * working access to remote files