Tiledbsoma

1.6.2 delivers a Python-only bugfix on the `release-1.6` branch. R is not affected, other than our commitment to keep Python and R API versions synchronized.

Bug fixes

* [python] Allow specification of X names on ingest [release-1.6] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/1996
* [python] Minor update to `from_h5ad` online help by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/1999
* [r] tiledbsoma 1.6.2 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/2006

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/1.6.1...1.6.2

What's Changed

1.6.1 delivers a Python-only bugfix on the `release-1.6` branch. R is not affected, other than our commitment to keep Python and R API versions synchronized.

* [Backport release-1.6] [python] Fix `from_anndata()` to respect `var_id_name` by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1964
* [r] Update `DESCRIPTION` and `NEWS.md` for 1.6.1 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/1974


**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/1.6.0...1.6.1

New features added

* [python] Add unit tests for obsm, obsp, and to_anndata 1942
* [python] Depend on `somacore` 1.0.6 (1940) (1941) which brings in https://github.com/single-cell-data/SOMA/pull/179 which add `obsm`, etc. to `ExperimentAxisQuery`

Minor changes

* [python/r/c++] Depend on core 2.18.2, tiledb-py 0.24.0, tiledb-r 0.22.0 (1936)
* [python] Avoid a double log statement on debug-mode ingest (1918)
* [python] Update pyarrow dependency (1925)
* [python] Fix `pyarrow.compute` for version 12 (1908)
* [python] Normalize unit-test exception coverage (1909)
* [python] Use `numba<0.58` on `release-1.6` branch (1939)
* [r] `tiledbsoma-r` 1.6.0 (1943)
* [r/ci] Show CPU info in R CI as well as Python CI (1956) (1958)
* [r] No longer show 'libtiledb=' before core library version triplet (1929)
* [r] Update tests (1928)
* [r] Future-proof one assertion for an upcoming change in R 4.4.0 (1914)
* [r] Condition one more test file on 'extended mode' (1907)
* [r] Restore `expect_no_condition()` tests in `Seurat` object outgestion (1906)

Bug fixes

* [python] Append-mode ingestion with disjoint measurement names (1919)
* [python] Work around apparent AWS ABI clash with pyarrow on MacOS (1938)
* [r] Arrays should remain open after write (1947) (1949)
* [c++] Modify `ManagedQuery` to perform async queries (1953) (1954)

1.5.3 delivers a Python-only bugfix on the `release-1.5` branch. R is not affected, other than our commitment to keep Python and R API versions synchronized.

Bug fixes

* [python] Allow specification of X names on ingest [release-1.5] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/1995
* [python] Minor update to `from_h5ad` online help (backport release-1.5) by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/2003
* TileDB-SOMA 1.5.3 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/2004

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/1.5.2...1.5.3

1.5.2 delivers a Python-only bugfix on the `release-1.5` branch. R is not affected, other than our commitment to keep Python and R API versions synchronized.

Bug fixes

* [Backport release-1.5] [python] Append-mode ingestion with disjoint measurement names by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1922
* [Backport release-1.5] [python] Fix `from_anndata()` to respect `var_id_name` by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1968

Minor changes

* [Backport release-1.5] [python] Fix `pyarrow.compute` import for version 12 by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1910
* [Backport release-1.5] [python] Normalize unit-test exception coverage by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1911
* [Backport release-1.5] [python] Avoid a double log statement on debug-mode ingest by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1920
* [Backport release-1.5] [r] Condition one more test file on 'extended mode' by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1913
* [Backport release-1.5] [r] Restore `expect_no_condition()` tests in `Seurat` object outgestion by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1912
* [Backport release-1.5] [r] Future-proof one assertion for an upcoming change in R 4.4.0 by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1921
* [r] Update `DESCRIPTION` and `NEWS.md` for 1.5.2 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/1972

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/1.5.1...1.5.2

Bug fixes

This is a minor bug-fix release immediately following 1.5.0. Feature deliveries previously scheduled for 1.5.1 will be in 1.5.2.

* [Backport release-1.5] [c++] Set `result_order_` in `SOMAArray` constructor initializer list by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1889
* [Backport release-1.5] `ResultOrder` validation in `SOMAArray::reset` by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1902
* [Backport release-1.5] [python] Fix an f-string by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1893
* [Backport release-1.5] [python] Fix performance regression in bounding-box calculation by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1899
* [Backport release-1.5] [r] Install SeuratObject from source on macOS, rely on update r2u binary on linux by github-actions in https://github.com/single-cell-data/TileDB-SOMA/pull/1901

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/1.5.0...1.5.1