Tiledbsoma

What's Changed

Updates for ingestion and query performance, respectively, for appending multiple H5ADs to a single soma.

* [python] Introduce schema-only-mode for parallel append-ingest by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/541
* [python] Update tile capacity by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/533

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.16...0.1.17

What's Changed

* Update R version in prep for package tag by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/526

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.15...0.1.16

What's Changed

* Parallelized ingest by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/511
* Don't use default assay name for Seurat objects by aaronwolen in https://github.com/single-cell-data/TileDB-SOMA/pull/507
* Allow readback of SOMAs that lack an `uns` by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/524

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.14...0.1.15

What's Changed

* Parallelize obs & var within soma.query by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/506

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.13...0.1.14

What's Changed

Performance:

* [python] Expose a faster method for member-URI enumeration by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/450

Functionality:

* [python] Allow specifiable X layer names for soma.query by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/474
* Correct element names on to_anndata for tiledb-cloud URIs by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/500
* Depend on TileDB-Py 0.18.1 [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/502
* [python] Update to TileDB-Py 0.18.0 [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/475

Minor/internal:

* [python] Use TileDB-Py 0.18.0 attr_cond -> cond by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/477
* Wording-neaten for to_anndata with logging by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/482
* [python] Disallow duplicates [main-old branch] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/436

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.12...0.1.13

What's Changed

This is a significant release:

* The [Python implementation](https://github.com/single-cell-data/TileDB-SOMA/tree/main-old/apis/python) has been renamed from `tiledbsc` to `tiledbsoma`
* The [R implementation](https://github.com/single-cell-data/TileDB-SOMA/tree/main-old/apis/r) has been moved into this package from its prior location at https://github.com/TileDB-Inc/tiledbsc

Breaking changes

* Rename `tiledbsc` to `tiledbsoma` everywhere on the old branch by johnkerl in 287
* Import https://github.com/TileDB-Inc/tiledbsc (R package) by johnkerl in #285
* Update ASCII storage for dataframes by johnkerl in 273

New features added

* Depend on TileDB-Py 0.17.4 by johnkerl in 335
* Correctly ingest multiple AnnData X layers by johnkerl in 326
* Support non-standard dim names for dataframes by johnkerl in 280

Minor changes

* Bump R version by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/351
* Unbreak R CI by johnkerl in 349
* Update R CI logic by johnkerl in 292
* Late update from 292 by johnkerl in 296
* Rename `apis/R` to `apis/r` by johnkerl in 320
* Debugging R-CMD-check CI failures by johnkerl in 289
* Error-check types on from_anndata/from_h5ad by johnkerl in 293
* Suppress C++ build for old branch by johnkerl in 341
* README.md updates, main-old branch by johnkerl in 344

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.11...0.1.20