Tiledbsoma

First stamp of `main`, which is a dev branch -- `main-old` has releasables on PyPI using 0.1.*.

What's Changed

This is all iterative dev work -- no major release, just a pypi-installable progress point people can use as a reference while collaborating forward.

* Split tiledbsc and tiledbsoma into separate branches by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/282
* Check for errors on scripts/setup by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/283
* Make __getattr__ Pythonic on key-not-found by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/288
* C++ SOMA pre-release by gspowley in https://github.com/single-cell-data/TileDB-SOMA/pull/286
* Error-check types on from_anndata/from_h5ad by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/294
* Support zero-sized arrays by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/295
* Improve C++ build by gspowley in https://github.com/single-cell-data/TileDB-SOMA/pull/304
* Optimize __repr__ by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/303
* MacOS findings by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/314
* Document C++ build options by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/316
* Update C++ CLI example by gspowley in https://github.com/single-cell-data/TileDB-SOMA/pull/317
* Enable option for enhancing debug-log visibility by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/319
* Propagate ctx through reprs and member-constructs by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/318
* Propagate ctx through reprs and member-constructs, continued by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/323
* improve column_name handling in dataframe read operations by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/327
* add missing double backtick by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/332
* quality of life: add venv to gitignore by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/334
* Depend on TileDB-Py 0.17.4 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/336
* NdArray implementation work (create, props) by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/339
* No readthedocs build on main for now by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/342
* Initial R API by aaronwolen in https://github.com/single-cell-data/TileDB-SOMA/pull/321
* README.md updates, main branch by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/345
* revise version API to match spec by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/333
* Replace array->timestamp() with array->open_timestamp_end() by eddelbuettel in https://github.com/single-cell-data/TileDB-SOMA/pull/350
* NdArray refinement, part 2 by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/343
* Enable conda build and release by gspowley in https://github.com/single-cell-data/TileDB-SOMA/pull/348
* Fix MacOS build with local TileDB core by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/354
* SOMACollection: fix loose check in create logic by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/357
* Third tranche of NdArray refinement. by bkmartinjr in https://github.com/single-cell-data/TileDB-SOMA/pull/347
* Add initial C++ support for the R package by eddelbuettel in https://github.com/single-cell-data/TileDB-SOMA/pull/352
* Deduplicate C++ source files by eddelbuettel in https://github.com/single-cell-data/TileDB-SOMA/pull/364
* Publish main-branch pre-releases to pypi.org by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/366

New Contributors
* eddelbuettel made their first contribution in https://github.com/single-cell-data/TileDB-SOMA/pull/350

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.11...0.5.0a1

What's Changed

This simply loosens the version dependency on `tiledb-py`, while still preferring the most recent version.

* tiledbsoma 0.1.22 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/733

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.21...0.1.22

What's Changed

Nothing new from [0.1.20](https://github.com/single-cell-data/TileDB-SOMA/releases/tag/0.1.20), except 0.1.20 was missing a wheel at PyPI. This release fixes that.

* tiledbsoma 0.1.21 [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/705

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.19...0.1.21

-- **DO NOT USE -- CREATED IN ERROR** --

This was tagged from `main` when it should have been tagged from `main-old`.

This has been yanked from https://pypi.org/project/tiledbsoma

Major

Ingestion UX:

* [python] Less-in-core ingest from H5AD [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/627
* [python] Resume-ingest mode [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/628

Dependency updates:

* Update to TileDB 2.13 [main-old branch] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/586
* [r] TileDB-R 0.17.1 by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/670
* [python] Update to schema-only mode for subsequent single-soma ingests [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/546

Minor

* [r] Release 0.1.19 by aaronwolen in https://github.com/single-cell-data/TileDB-SOMA/pull/621
* [python] Update to setuptools 65.5.1 [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/631
* [r] Regularize test-file naming [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/554
* [python] No more memory reduction [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/687
* [python] Improve resume-mode/schema-only testing [main-old] by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/666

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.19...0.1.20

What's Changed

* Do not rewrite pre-creation URI to post-creation URI by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/557
* Allow soma.query with X/data not in X_layer_names by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/567
* Parameterize dataframe capacities by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/565

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.18...0.1.19

What's Changed

* Apply ctx to tiledb.array_exists by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/551
* [r] Use X_capacity=1000 to optimize reads by johnkerl in https://github.com/single-cell-data/TileDB-SOMA/pull/543
* [r] Expand batched reader support to AnnotationMatrix arrays by aaronwolen in https://github.com/single-cell-data/TileDB-SOMA/pull/548

**Full Changelog**: https://github.com/single-cell-data/TileDB-SOMA/compare/0.1.17...0.1.18