Tiledbsoma

Performance improvements for collection-level queries

What's Changed

The main change is added parallelization, within this package, for queries over `SOMACollection` objects. Additional and significant performance improvements for queries on each single SOMA within a given collection are recently obtained via the `TileDB-Py` 0.17.0 release which includes TileDB core 2.11.0.

Major PRs:

* Some thread-pool-executor parallelizations, part 1/n by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/238
* Parallelize soma collection queries by Shelnutt2 in https://github.com/single-cell-data/TileDB-SingleCell/pull/239
* Use max_workers config for bounded thread-pool execution by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/240
* Parallelize constructors in collection-iterator by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/241
* SOMA-list query option, and further thread-pool experiments by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/242
* Wording updates for doc cover page by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/236

Minor/internal PRs:

* Minor tweak to if-exists logic by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/231
* Do not throw on "in" check on unpopulated collection by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/233
* Use macos-12 for CI due to GitHub brownout of macos-10.15 by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/234


**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.1.4...0.1.5

from_h5ad_unless_exists, and C++ infra-prep

What's Changed

* from_h5ad_unless_exists() needs to accept ctx by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/230
* Add SOMAQuery to C++ API by gspowley in https://github.com/single-cell-data/TileDB-SingleCell/pull/217
* Fix pybind11 build issue by gspowley in https://github.com/single-cell-data/TileDB-SingleCell/pull/225
* Add typeguard to dev requirements and sort lists. by thetorpedodog in https://github.com/single-cell-data/TileDB-SingleCell/pull/226

New Contributors
* thetorpedodog made their first contribution in https://github.com/single-cell-data/TileDB-SingleCell/pull/226

**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.1.3...0.1.4

Additional performance optimizations

What's Changed

* More REST-server call-avoidance by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/223

**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.1.2...0.1.3

Performance optimizations

What's Changed

* Optimize constructor time for tiledb-cloud case by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/222
* Correctly support element deletion in TileDB Cloud by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/220
* Allow relative flag as argument by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/221

**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.1.1...0.1.2

Update to most recent TileDB Core version

What's Changed

* Depend on TileDB-Py 0.16.2 by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/219

* Strict static typing by gsakkis in https://github.com/single-cell-data/TileDB-SingleCell/pull/216
* Editable-install notes by johnkerl in https://github.com/single-cell-data/TileDB-SingleCell/pull/218

**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.1.0...0.1.1

Align 0.1.x release numbering with tiledbsc-r repo

https://github.com/TileDB-Inc/tiledbsc/releases has already been using 0.1.x numbering; so should we (we've been using 0.0.x).

**Full Changelog**: https://github.com/single-cell-data/TileDB-SingleCell/compare/0.0.9...0.1.0