Webknossos

cluster_tools

Fixed
- Fixed the execution of non-array jobs using slurm. [864](https://github.com/scalableminds/webknossos-libs/pull/864)

wkcuber

Fixed
- Fixed a bug where converting coarse-mag Knossos data would crash with an assertion error. [857](https://github.com/scalableminds/webknossos-libs/pull/857)

webknossos

Fixed
- Fixed a bug, where the image order could be randomized when passing a directory path to `Dataset.add_layer_from_images`. [854](https://github.com/scalableminds/webknossos-libs/pull/854)


cluster_tools

Fixed
- Fixed `TypeError` when aborting a run that occurred under certain circumstances. [851](https://github.com/scalableminds/webknossos-libs/pull/851)

webknossos

Added
- `Dataset.from_images` and `dataset.add_layer_from_images` have new features: [842](https://github.com/scalableminds/webknossos-libs/pull/842)
* `dm3` and `dm4` datasets can be read without bioformats now.
* It's possible to completely disable the bioformats adapter by setting `use_bioformats` to False.
* Lists of images can now be handled with other readers, before only images supported by skimage worked in lists.


wkcuber

Changed
- Improved perfomance of `wkcuber.tile_cubing` and making it more robust. [840](https://github.com/scalableminds/webknossos-libs/pull/840)


cluster_tools

Changed
- When using the slurm or pbs distribution strategy, scheduled jobs are automatically canceled when aborting a run, i.e. if the SIGINT signal is received. [838](https://github.com/scalableminds/webknossos-libs/pull/838)

webknossos

Breaking Changes
- Removed the `id` attribute of the `BoundingBox` class, also from the constructor. [836](https://github.com/scalableminds/webknossos-libs/pull/836)

Fixed
- Fixed bounding box serialization in NMLs, so that bounding boxes which are uploaded via annotations are now recognized properly by webKnossos. [836](https://github.com/scalableminds/webknossos-libs/pull/836)
- Bounding boxes keep their name, color and visibility when transformed via methods, such as `bbox.padded_with_margins()`. [836](https://github.com/scalableminds/webknossos-libs/pull/836)

webknossos

Added
- Short links, such as `https://webknossos.org/links/93zLg9U9vJ3c_UWp`, are now supported for dataset and annotation urls in `download` and `open_remote` methods. [#837](https://github.com/scalableminds/webknossos-libs/pull/837)