webknossos
Breaking Changes
- The `executor` argument can now be passed to the following methods,
`args` is deprecated now for those [805](https://github.com/scalableminds/webknossos-libs/pull/805):
* `dataset.copy_dataset(…)`
* `layer.upsample(…)`
* `layer.downsample(…)`
* `layer.downsample_mag(…)`
* `layer.downsample_mag_list(…)`
* `layer.redownsample(…)`
* `mag_view.compress(…)`
* `view.content_is_equal(…)`
Added
- Added `Dataset.from_images`, which converts images to a Dataset, possibly consisting of multiple layers. [808](https://github.com/scalableminds/webknossos-libs/pull/808
- Added `Annotation.open_as_remote_dataset(…)`, which is a shorthand for `Annotation.download(...).get_remote_annotation_dataset()`.
[811](https://github.com/scalableminds/webknossos-libs/pull/811)
- `skeleton.save()` now also accepts paths with a `.zip` suffix. [811](https://github.com/scalableminds/webknossos-libs/pull/811)
- Added `annotation.get_volume_layer_segments()` to interact with information from the `Segments` tab in annotations. This method returns a dict from segment ids to an object containing optional segment `name`, `color` and `anchor_position`. [812](https://github.com/scalableminds/webknossos-libs/pull/812)
- Added convenience methods `Dataset.compress` and `Dataset.downsample` for compressing and downsampling all layers and mags in a dataset. [813](https://github.com/scalableminds/webknossos-libs/pull/813)
- Added examples for downloading segment masks from webKnossos and cubing & uploading tiff stacks. [813](https://github.com/scalableminds/webknossos-libs/pull/813)
wkcuber
Changed
- Some methods now take and `executor` argument instead of `args` or `executor_args`.
This does not affect the CLI arguments. [805](https://github.com/scalableminds/webknossos-libs/pull/805)