Nextflow

- Added the support for Bioconda 493
- Added support for AWS Batch job timeout 648
- Added jobs submit rate limit 198
- Added offline option 665
- Enabling Java 9/10 support for build and launcher scripts 674
- Fixed Expose Kubernetes Secrets to worker pods 651
- Fixed K8s execution hangs when a non-existing docker image is specified 697
- Fixed K8s execution terminates abruptly if a pod requires more resources than available ones 676
- Fixed K8s executor does not report command log when a task fail 699
- Fixed Configuration profile is not handled properly by the kuberun command 696
- Fixed Enhance process metrics to avoid usage of ps tool 499
- Fixed PublishDir should use copy mode by default when the target is a S3 path 718
- Fixed Unbounded variable breaks task launcher script 722
- Fixed Escape filenames when copying from S3 717
- Fixed AWS executor should use putObject API to upload job scripts to S3 712
- Fixed Exception is thrown when an output folder contains a circular symlink path 701

- Fixed Default ext property are not included in process context 673
- Fixed Operator concat throws a ConcurrentModificationException 675
- Fixed Output file is not recognised when it's created into a subdir and the name matches an input 688
- Fixed Empty container definition being ignored when default one is specified 691
- Fixed K8s client fails to connect the cluster when client key nor certificate is specified 692
- Fixed K8s executor hang on pod creation failure
- Added select in -R for memory for LSF executor 683

- Fixed Buffer operator fails to recognise optional parameter when a closing condition is specified 652
- Fixed PublishDir mode "copyNoFollow" does not work for directories 658
- Update NameGenerator adjectives 656

- Added `containerOptions` directive 415
- Added support for multiple `publishDir` directives for process 256
- Added cleanup feature to delete workflow work dir on completion 649
- Added label directive and process configuration selectors `withLabel` and `withName` 623
- Fixed Invalid process cache when using a different environment module 627
- Upgrading groovy runtime to version 2.4.15

- Fixed Class FtpURLConnection is not accessible when using Java 9 646
- Fixed Lengthen mktemp TEMPLATE so works on BusyBox 647
- Fixed Report HTML/CSS tweaks to make progress bar text overflow work properly 645
- Fixed typo in the nextflow launcher 643

- Fixed A HTTP access error is raised when the URL contains a ? character 634
- Fixed Creation of temp files in the /dev/shm directory can result in a permission
error in some Linux installations 638
- Make process echo safer