Nextflow

- Fixed Output declarations with a glob pattern fail when AWS Batch executor is used 748
- Fixed Scratch directive not working for AWS Batch executor 740
- Fixed K8s launcher does not parse remote config files 738
- Minor refactoring to enable Groovy 2.5 compilation 20b6d933 a8b994f1

- Use a daemon thread for watchPath method 735
- Fixed Gitlab API v3 has been deprecated and does not work any more 734
- Fixed Unable to access params defined in the top scope from a nested profile 733
- Fixed Process config selectors do not work when the config is included 729
- Fixed Improve the error message when a missing property is used in the config file 730
- Added Travis build support for jdk10
- Added documentation for `until` operator 736
- Added mailer recipients check
- Increased Singularity pull timeout to 20 minutes
- Updated build to Gradle 4.8

- Added the support for Bioconda 493
- Added support for AWS Batch job timeout 648
- Added jobs submit rate limit 198
- Added offline option 665
- Enabling Java 9/10 support for build and launcher scripts 674
- Fixed Expose Kubernetes Secrets to worker pods 651
- Fixed K8s execution hangs when a non-existing docker image is specified 697
- Fixed K8s execution terminates abruptly if a pod requires more resources than available ones 676
- Fixed K8s executor does not report command log when a task fail 699
- Fixed Configuration profile is not handled properly by the kuberun command 696
- Fixed Enhance process metrics to avoid usage of ps tool 499
- Fixed PublishDir should use copy mode by default when the target is a S3 path 718
- Fixed Unbounded variable breaks task launcher script 722
- Fixed Escape filenames when copying from S3 717
- Fixed AWS executor should use putObject API to upload job scripts to S3 712
- Fixed Exception is thrown when an output folder contains a circular symlink path 701

- Fixed Default ext property are not included in process context 673
- Fixed Operator concat throws a ConcurrentModificationException 675
- Fixed Output file is not recognised when it's created into a subdir and the name matches an input 688
- Fixed Empty container definition being ignored when default one is specified 691
- Fixed K8s client fails to connect the cluster when client key nor certificate is specified 692
- Fixed K8s executor hang on pod creation failure
- Added select in -R for memory for LSF executor 683

- Fixed Buffer operator fails to recognise optional parameter when a closing condition is specified 652
- Fixed PublishDir mode "copyNoFollow" does not work for directories 658
- Update NameGenerator adjectives 656

- Added `containerOptions` directive 415
- Added support for multiple `publishDir` directives for process 256
- Added cleanup feature to delete workflow work dir on completion 649
- Added label directive and process configuration selectors `withLabel` and `withName` 623
- Fixed Invalid process cache when using a different environment module 627
- Upgrading groovy runtime to version 2.4.15