Nextflow

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0.2.8

- Improved scheduling of 'merge', there are executed like a single job
- Fixed caching for 'merge' task
- Refactored class 'TaskDef' to 'TaskRun'

0.2.7

- Added 'eachWithIndex' iterator like method on dataflow channel
- Make the SGE task processor to write the output file in the job execution directory
- Renaming the CLI option -continue to -resume
- Adding File extension methods: getBaseName(), getExtension()

0.2.6

- Fixed a bug on errors handling
- Added default parameters in config file
- Added Channel type
- Added cacheableDir and cacheableFile
- Upgraded to Groovy 2.1.3

0.2.5

- Added LSF executor (experimental)
- Added command line option '-history'
- Added command line option '-continue' to resume the execution of an interrupted execution
- Using Non-daemon threads by default
- Refactored SGE task processor

0.2.4

- Using minimal Groovy dependencies
- SGE/OGE processor works in the scratch folder and un-stage result files when complete
- SGE/OGE handles stdin transparently

0.2.3

- Renamed 'queue' to 'channel'
- Adding a basic tasks cache mechanism
- Supporting 'shell' parameters

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