Nextflow

Latest version: v24.10.5

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0.21.2

- Fixed PBS professional batch scheduler submission error 209
- Fixed Reference to a collection of files is not resolved properly in the output section 214
- Improved failed and ignored processes reporting
- Fixed null workflow.projectDir when launching a script file
- Do no output link file when `followLinks` option is disabled

0.21.1

- Fixed NFS work dir is not detected correctly 206
- Fixed `splitFasta` operator with the file parameter will not split into single fasta files 181
- Enable log file for commands when debug or trace option is specified
- Added validation checks to `fromPath` and `fromFilePairs` methods

0.21.0

- Fixed Command line params do not override params defined in the nextflow.config file 202

0.21.0rc1

- Fixed Ability to customize job name submitted to the scheduler 140
- Fixed Duplicate output error when no channel specified 182
- Fixed File paths containing a timestamp are parsed as a Duration object 185
- Fixed ClosedByInterruptException is thrown randomly 188
- Fixed Pipeline hangs when `Channel.from` argument is an empty list 189
- Fixed Handle customised sbatch returning the jobid by itself 190
- Fixed LocalExecutor can randomly hang with no running task 191
- Fixed Missing flag in SLURM `squeue` call 193
- Fixed Process script declaring a regexp expression results in a IllegalAccessException 199
- Merged Silence mkdir error if NXF_HOME not writable 187
- Refactored ParallelTaskProcessor and TaskProcessor classes to a single class
- Added `ST` and `BF` queue statuses to SLURM executor
- Improved logging information
- Upgrade to Gradle 2.14

0.20.1

- Fixed Directives do not accept a negative numeric value 180
- Fixed Dynamic errorStrategy is not evaluated correctly 183
- Fixed Pipeline hangs when error strategy is used and an upstream process fail
- Added environment to ContainerBuilder and implement environment export for Shifter containers
- Updated Groovy runtime to version 2.4.7

0.20.0

- Added fromFilePairs channel factory method
- Added `finish` error strategy 158
- Added ability to change the name and the save path of published files 178
- Added a syntax validation check for process blocks keywords 177
- Fixed It's not possible to specify environment modules w/o a version number 174
- Fixed Local process kill signal is not propagated to children processes 172
- Fixed scratchDir is overwritten by TMPDIR 171
- Removed deprecated `Channel.path` methods
- Ignore missing COUT and CERR variables

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