- Fixed PBS professional batch scheduler submission error 209 - Fixed Reference to a collection of files is not resolved properly in the output section 214 - Improved failed and ignored processes reporting - Fixed null workflow.projectDir when launching a script file - Do no output link file when `followLinks` option is disabled
0.21.1
- Fixed NFS work dir is not detected correctly 206 - Fixed `splitFasta` operator with the file parameter will not split into single fasta files 181 - Enable log file for commands when debug or trace option is specified - Added validation checks to `fromPath` and `fromFilePairs` methods
0.21.0
- Fixed Command line params do not override params defined in the nextflow.config file 202
0.21.0rc1
- Fixed Ability to customize job name submitted to the scheduler 140 - Fixed Duplicate output error when no channel specified 182 - Fixed File paths containing a timestamp are parsed as a Duration object 185 - Fixed ClosedByInterruptException is thrown randomly 188 - Fixed Pipeline hangs when `Channel.from` argument is an empty list 189 - Fixed Handle customised sbatch returning the jobid by itself 190 - Fixed LocalExecutor can randomly hang with no running task 191 - Fixed Missing flag in SLURM `squeue` call 193 - Fixed Process script declaring a regexp expression results in a IllegalAccessException 199 - Merged Silence mkdir error if NXF_HOME not writable 187 - Refactored ParallelTaskProcessor and TaskProcessor classes to a single class - Added `ST` and `BF` queue statuses to SLURM executor - Improved logging information - Upgrade to Gradle 2.14
0.20.1
- Fixed Directives do not accept a negative numeric value 180 - Fixed Dynamic errorStrategy is not evaluated correctly 183 - Fixed Pipeline hangs when error strategy is used and an upstream process fail - Added environment to ContainerBuilder and implement environment export for Shifter containers - Updated Groovy runtime to version 2.4.7
0.20.0
- Added fromFilePairs channel factory method - Added `finish` error strategy 158 - Added ability to change the name and the save path of published files 178 - Added a syntax validation check for process blocks keywords 177 - Fixed It's not possible to specify environment modules w/o a version number 174 - Fixed Local process kill signal is not propagated to children processes 172 - Fixed scratchDir is overwritten by TMPDIR 171 - Removed deprecated `Channel.path` methods - Ignore missing COUT and CERR variables