Niworkflows

--------------------
Minor improvements to allow more flexible template selection within
the brain extraction workflow, in particular to enable using infant and
pediatric templates.

* ENH: Accept template specifications in ``antsBrainExtraction`` (364) oesteban

--------------------
A housekeeping release, including bugfixes and minor enhancements.
With thanks to William H. Thompson for contributions.

* PIN: TemplateFlow to latest (0.3.0), including infant and pediatric templates (363) oesteban
* RF: Move BOLD-reference generation workflows to niworkflows (362) oesteban
* ENH: Create informative HTML reportlet on missing MELODIC mix (337) effigies
* ENH: Signal extraction of parcels/ROIs from single NIfTI file (303) wiheto

--------------------
Hotfix to the new confounds plot showing correlations.

* FIX: Refine implementation of plotting confounds correlations (360) oesteban

-------------------
Hotfix addressing x-form issues on our ``antsBrainExtraction``'s interpretation.

* ENH: Ensure consistency of headers along brain extraction workflow (359) oesteban

-------------------
A hotfix release to allow new documentation building of fMRIPrep.

* FIX: Tolerate missing ANTs at workflow construction (358) effigies

-------------------
A number of new features and bugfixes. This release includes a refactor of the
reports generation system that attempts to better generalize to other BIDS-Apps.
The new reports internally use pybids to find reportlets, and the configuration
file has been migrated to YAML to allow line breaks when captioning reportlets.
The release also provides more infrastructure for fMRIPrep and sMRIPrep, including
some BIDS-related interfaces.

* ENH: Miscellaneous improvements to the Reports (357) oesteban
* ENH: Add a ``KeySelect`` interface (347) oesteban
* FIX: BusError in ``DerivativesDataSink`` (356) effigies
* Revert "FIX: BusError in ``DerivativesDataSink``" (355) effigies
* FIX: ``GenerateSamplingReference`` failed extension with 348 (354) oesteban
* FIX: Revise tests after sloppy merge of 352 (353) oesteban
* FIX: Reportlets path and output path were wrong (352) oesteban
* FIX: Use safe loader for YAML data input in reports (351) oesteban
* FIX: Allow ``native`` grids (i.e. pass-through) for ``GenerateSamplingReference`` (348) oesteban
* FIX: BusError in ``DerivativesDataSink`` (350) effigies
* ENH: Add new confounds model to reports template (349) oesteban
* ENH/FIX: Migrate default config to YAML, fix ROIs query. (346) oesteban
* REL: Synchronization with latest fMRIPrep changes + minor improvements (345) oesteban
* ENH: ``DerivativesDataSink`` now accepts metadata dictionaries too (332) oesteban
* ENH: Upstream ``init_gifti_surface_wf`` from sMRIPrep (328) oesteban
* FIX: Do not generate 4D references out of 4D single-band references (SBRefs) (338) oesteban
* FIX: Allow pipelining dynamic outputs of ``ReadSidecarJSON`` (340) oesteban
* ENH: Dictionary manipulation / TSV to dict, merge multiple dicts (341) rciric
* ENH: Run a second ``N4BiasFieldCorrection`` node to refine INU correction (342) oesteban
* ENH: Add an ``allowed_entities`` setting in ``DerivativesDataSink`` (343) oesteban
* ENH: Refactor of the Report generation tools (344) oesteban
* PIN: Update dependencies - nilearn!=0.5.0,!=0.5.1 and latest templateflow (0.1.7)

0.8.x series
============