Stpipeline

Latest version: v1.8.1

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0.8.1

* Removed the pair mode keep option
* Removed un-neccessary pair mode and mapped checks
after alignment

0.8.0

* Added option to do the STAR 2 pass mode
* Removed option to run pipeline without IDs
* Speed improvements
* Perform demultiplex after mapping
* No attaching the barcode to reverse reads
* Removing some parameters
* Some improvements in stDataPlotter
* Option to use BAM format
* Removed annotation filtering step
* Removed forward trimming parameters
* Output gene names even with ENSEMBL

0.7.7

* Small memory improvements
* Updates in plotting script

0.7.6

* End coordinates now contain the whole read length
* Make annotation strand aware (reverse)
* Updated to STAR 2.5

0.7.5

* Fixed a small bug

0.7.4

* Added some memory improvements

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