Stpipeline

Latest version: v1.8.1

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1.0.2

* If no temp folder is given a new unique one is created on top of the execution folder
* integrate createDataset.py into the code of the pipeline
* Adjusted some parameters names and descriptions (no UMI is default)
* Added sliding window when counting unique molecules
* Added support to bzip

1.0.1

* Fixed small bug in the parsing of the umi quality parameter

1.0.0

* Added option to check for UMI quality
* Optimized the UMI template check code
* Optimized how the unique molecules are counted
* Better stats for the quality filter step
* Updated convertEnsemblToNames script
* Updated stringdocs

0.9.9

* Small bug fixes

0.9.6

* Fixed a bug with the non ambiguous option
* Fix a bug in the saturation computation

0.9.5

* When a R2 is trimmed its correspondant R1 is trimmed as well

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