* When removing adaptors (homopolymers streches) allow to up to 3 missmatches * Added GC content filter (same % as AT content)
1.0.3
* Fixed a minor bug in the counting of UMIs or - strand
1.0.2
* If no temp folder is given a new unique one is created on top of the execution folder * integrate createDataset.py into the code of the pipeline * Adjusted some parameters names and descriptions (no UMI is default) * Added sliding window when counting unique molecules * Added support to bzip
1.0.1
* Fixed small bug in the parsing of the umi quality parameter
1.0.0
* Added option to check for UMI quality * Optimized the UMI template check code * Optimized how the unique molecules are counted * Better stats for the quality filter step * Updated convertEnsemblToNames script * Updated stringdocs