Stpipeline

Latest version: v1.8.1

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0.5.4

* Added parameter to disable soft clipping in mapping
* Disable softclipping in rRNA filter
* Make sure that discarded reads after rRNA filter are replaced by Ns
* Improved stats info a bit

0.5.3

* Bumped Taggd to 0.2.2

0.5.2

* Fixed a bug in the rRNA filter that would cause to not discard
rRNA mapped reads

0.5.1

* Added check when UMI is the same as barcode
* Added more stats
* Added percentiles distributiosn stats for createDAtaset
* Added support for BAM and SAM (not functional now)
* Added option to disable multiple aligned reads
* Fixed a bug in the bed file

0.5.0

* Added AT content filter in quality trimming
* Added min mapped length filter after mapping
* Make sure one of the multiple aligned reads is set as not multiple
aligned so it can be annotated
* Discard the other multiple aligned reads after mapping
* Disable sorting
* Restored back to use gene_id as column for annotation

0.4.9

* Changed naming convention
* Added support for normal RNA analysis

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