Stpipeline

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0.3.0

* Rewrite createDatasets.py
* Clean up repository and deprecated files
* Change the unit-test library and structure
* Refactor the unit-test (use pipeline API instead of command line calls)
* Ensure unit-test remove tmp files when failing
* Add better error handling
* Add unit-test for Molecular Barcodes
* Add Molecular Barcodes functionality
* General refactor and clean up
* Add invoke options (clean, build, install)
* Fix an important bug in createDatasets that caused incorrect
computation of reads counts

0.2.5

* Improved installers
* Small bug fixes
* Added basic uni-test to do a run of the pipeline

0.2.4

* Some optimizations and bug fixes

0.2.3

* Fixed a error with new version of HTSeq-count that will discard more reads

0.2.2

* Added extra parameters
* Fixed some typos
* Fixed a bug that caused to remove some bases from the barcode ID in the rw reads

0.2.1

* code refactored and modularized
* add argparse for parameters parsing
* add API for Amazon EMR and terminal version
* better error handling
* optimized code
* new version of FindIndexes
* remove dependencies
* added proper installers and documentation

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