* Added AT content filter in quality trimming * Added min mapped length filter after mapping * Make sure one of the multiple aligned reads is set as not multiple aligned so it can be annotated * Discard the other multiple aligned reads after mapping * Disable sorting * Restored back to use gene_id as column for annotation
0.4.9
* Changed naming convention * Added support for normal RNA analysis
0.4.8
* Improved STAR configuration * Added mapping post processing to filter out and adjust reversed reads * Changed to use gene_name for annotation * Fixed some bugs and some improvements * Fixed bugs in the trimming
0.4.7
* Improved stats * Fixed a bug that would remove original input files * Added a script to convert ENSEMBL ids to gene names
0.4.6
* Fixed a bug that would not compute the number of discarded reads when using molecular barcodes