Malariagen-data

What's Changed
* Add GitHub workflow to add the triage label to opened, reopened issues by leehart in https://github.com/malariagen/malariagen-data-python/pull/713
* Update plot_njt() in distance.py - render_mode="svg" by cclarkson in https://github.com/malariagen/malariagen-data-python/pull/718


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v15.0.0...v15.0.1

What's Changed
* Add support for writing Anopheles SNP data to the plink binary file format (shadow PR) by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/584
* Add support for writing Anopheles SNP data to the plink binary file format by tristanpwdennis in https://github.com/malariagen/malariagen-data-python/pull/515
* Replicate anjl params to avoid global import causing delays by leehart in https://github.com/malariagen/malariagen-data-python/pull/673
* Add Pf8 by eselimnl in https://github.com/malariagen/malariagen-data-python/pull/659
* Add gene_labels and labels to plot_genes() by leehart in https://github.com/malariagen/malariagen-data-python/pull/653
* Ensure that missing CNVs are shown in a different colour in `plot_diplotype_clustering_advanced` by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/670
* Haplotype frequency analysis methods by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/630
* Refactor CNV frequencies functions to their own module by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/665
* Changed `figure`s into `optional_figure`s and `def_figure`s into `figure`s by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/676
* Expansion of the documentation by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/592
* Refactor unit and integration tests and corresponding github actions by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/686
* Palette option in `plot_cnv_hmm_heatmap` by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/688
* Add jonbrenas to the list of authors by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/696
* Add `karyotype` to the docs by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/701
* fix zarr-python to v2 by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/709
* Update pyproject.toml by cclarkson in https://github.com/malariagen/malariagen-data-python/pull/711

New Contributors
* tristanpwdennis made their first contribution in https://github.com/malariagen/malariagen-data-python/pull/515
* eselimnl made their first contribution in https://github.com/malariagen/malariagen-data-python/pull/659

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v14.0.0...v15.0.0

What's Changed
* Sort gene annotations by contig and start coordinate in `genome_features()` by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/649
* Add sample_query_options to more functions by leehart in https://github.com/malariagen/malariagen-data-python/pull/645
* Remove transient warning during pytests by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/650
* Colors in GWSS plots by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/591
* Gene CNV optimisation by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/655
* Sort discovered_releases numerically by leehart in https://github.com/malariagen/malariagen-data-python/pull/666
* Better error message for gene_cnv_frequencies() by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/668
* Add taxa and areas params to plot_frequencies_time_series() by leehart in https://github.com/malariagen/malariagen-data-python/pull/657


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.5.0...v14.0.0

What's Changed
* Add support for dynamic neighbour-joining by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/647
* Plot H12 GWSS traces for multiple cohorts together in a single figure by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/595


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.4.0...v13.5.0

What's Changed
* Replace np.in1d with np.isin in g123.py by leehart in https://github.com/malariagen/malariagen-data-python/pull/637
* Add cross_metadata to sample metadata section of Ag3 docs by leehart in https://github.com/malariagen/malariagen-data-python/pull/638
* Add Ag inversion karyotyping support by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/608
* Add sample location scatter maps by leehart in https://github.com/malariagen/malariagen-data-python/pull/639
* Use optional env var for show_progress in Ag3, Af1 by leehart in https://github.com/malariagen/malariagen-data-python/pull/640
* Improve neighbour-joining tree performance by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/641
* Small simplification to progress monitoring within plot_njt by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/643


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.3.0...v13.4.0

What's Changed
* Raise error if colab VM not in US by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/632
* Avoid random error when performing tests by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/634
* Add toolbar_options to grumbling gridplots by leehart in https://github.com/malariagen/malariagen-data-python/pull/633
* Add sample_query_options by leehart in https://github.com/malariagen/malariagen-data-python/pull/628


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.2.1...v13.3.0