Malariagen-data

Latest version: v15.0.1

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10.1.0

What's Changed
* Advanced diplotype clustering by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/537
* Advanced diplotype clustering - follow-up by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/550


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v10.0.0...v10.1.0

10.0.0

What's Changed
* Pandas FutureWarning: 'A' is deprecated and will be removed in a future version, please use 'Y' instead by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/529
* Pandas FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0 by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/533
* Bokeh BokehDeprecationWarning: 'circle() method with size value' was deprecated in Bokeh 3.4.0 and will be removed, use 'scatter(size=...) instead' by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/534
* Update poetry lock file by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/527
* Add sample_query argument for cnv_discordant_read_calls function by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/528
* Add automatic selection of regional GCS storage by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/523
* Updated parasite test buckets from staging to release by nw20 in https://github.com/malariagen/malariagen-data-python/pull/541
* Ensure a site mask is used by default for Anopheles popgen functions by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/546

New Contributors
* nw20 made their first contribution in https://github.com/malariagen/malariagen-data-python/pull/541

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v9.0.0...v10.0.0

9.0.1

Release to activate Zenodo integration. No code changes.

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v9.0.0...v9.0.1

9.0.0

What's Changed
* Authenticate the user if accessing GCS by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/513
* Add support for Python 3.12, drop support for Python 3.8 by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/514
* Detect permission error by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/517
* Update support mailing address by ahernank in https://github.com/malariagen/malariagen-data-python/pull/520


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v8.8.0...v9.0.0

8.8.0

What's Changed
* Implement diplotype clustering, refactor haplotype clustering, and fix random_region_str() by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/507


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v8.7.0...v8.8.0

8.7.0

What's Changed
* Docs improvements by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/502
* Refactor H12 and H1X by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/503
* Add ENA run accessions function by ahernank in https://github.com/malariagen/malariagen-data-python/pull/496
* Add new discordant read calls version by ahernank in https://github.com/malariagen/malariagen-data-python/pull/506
* Access cohort group data by ahernank in https://github.com/malariagen/malariagen-data-python/pull/436


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v8.6.0...v8.7.0

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