Malariagen-data

Latest version: v13.5.0

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13.5.0

What's Changed
* Add support for dynamic neighbour-joining by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/647
* Plot H12 GWSS traces for multiple cohorts together in a single figure by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/595


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.4.0...v13.5.0

13.4.0

What's Changed
* Replace np.in1d with np.isin in g123.py by leehart in https://github.com/malariagen/malariagen-data-python/pull/637
* Add cross_metadata to sample metadata section of Ag3 docs by leehart in https://github.com/malariagen/malariagen-data-python/pull/638
* Add Ag inversion karyotyping support by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/608
* Add sample location scatter maps by leehart in https://github.com/malariagen/malariagen-data-python/pull/639
* Use optional env var for show_progress in Ag3, Af1 by leehart in https://github.com/malariagen/malariagen-data-python/pull/640
* Improve neighbour-joining tree performance by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/641
* Small simplification to progress monitoring within plot_njt by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/643


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.3.0...v13.4.0

13.3.0

What's Changed
* Raise error if colab VM not in US by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/632
* Avoid random error when performing tests by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/634
* Add toolbar_options to grumbling gridplots by leehart in https://github.com/malariagen/malariagen-data-python/pull/633
* Add sample_query_options by leehart in https://github.com/malariagen/malariagen-data-python/pull/628


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.2.1...v13.3.0

13.2.1

What's Changed
* Further work on scalability for large biallelic genotype data computations by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/626


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.2.0...v13.2.1

13.2.0

What's Changed
* Handle chunks parameter given as a size in memory; improve default chunks by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/622
* Random error when performing tests by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/619
* Fix center and zoom map parameters to allow int or float values by leehart in https://github.com/malariagen/malariagen-data-python/pull/625
* Set auto_pan False for marker popup in plot_frequencies_map_markers() by leehart in https://github.com/malariagen/malariagen-data-python/pull/624
* Improve performance when accessing biallelic SNP calls by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/623


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.1.0...v13.2.0

13.1.0

What's Changed
* Add parameters to the Anopheles pca function to allow better handling of outliers by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/616
* Support fractions for max_missing_an and min_minor_ac parameters when accessing biallelic SNPs by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/617


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.0.4...v13.1.0

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