Malariagen-data

Latest version: v15.0.1

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13.2.1

What's Changed
* Further work on scalability for large biallelic genotype data computations by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/626


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.2.0...v13.2.1

13.2.0

What's Changed
* Handle chunks parameter given as a size in memory; improve default chunks by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/622
* Random error when performing tests by jonbrenas in https://github.com/malariagen/malariagen-data-python/pull/619
* Fix center and zoom map parameters to allow int or float values by leehart in https://github.com/malariagen/malariagen-data-python/pull/625
* Set auto_pan False for marker popup in plot_frequencies_map_markers() by leehart in https://github.com/malariagen/malariagen-data-python/pull/624
* Improve performance when accessing biallelic SNP calls by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/623


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.1.0...v13.2.0

13.1.0

What's Changed
* Add parameters to the Anopheles pca function to allow better handling of outliers by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/616
* Support fractions for max_missing_an and min_minor_ac parameters when accessing biallelic SNPs by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/617


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.0.4...v13.1.0

13.0.4

What's Changed
* Update switcher.json by leehart in https://github.com/malariagen/malariagen-data-python/pull/602
* Pass through chunks when computing biallelic SNP calls by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/613
* Handle dask distributed progress by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/614
* More options for automatic sizing of chunks by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/615
* Fix typos in docs by leehart in https://github.com/malariagen/malariagen-data-python/pull/610


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.0.3...v13.0.4

13.0.3

What's Changed
* Upgrade scikit-allel minimum version 1.3.13 to resolve issues with running large PCAs on a distributed cluster by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/605


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.0.2...v13.0.3

13.0.2

What's Changed
* Upgrade scikit-allel to resolve issues running large PCAs on a distributed cluster by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/603


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v13.0.1...v13.0.2

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