Malariagen-data

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.10.0...v0.11.0

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.9.0...v0.10.0

Highlights
* `Ag3`: Add `haplotypes()` and supporting functions `open_haplotypes()` and `open_haplotype_sites()`.


What's Changed
* Reverse expected/actual in tests by cclarkson in https://github.com/malariagen/malariagen-data-python/pull/53
* Raise error if zero samples selected for allele frequency calculations by cclarkson in https://github.com/malariagen/malariagen-data-python/pull/52
* Add Ag3.haplotypes() implementation and tests by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/54


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.8.0...v0.9.0

Highlights
* `Ag3`: Add site filter columns to dataframes returned by `snp_effects()` and `snp_allele_frequencies()`.



What's Changed
* Add site filter columns to SNP dataframes by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/48


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.7.0...v0.8.0

Highlights

* `Ag3`: Rename parameter "populations" to "cohorts" to be consistent with sgkit terminology.

What's Changed
* Rename populations to cohorts by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/47


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.6.0...v0.7.0

Highlights
* `Ag3`: Add `gene_cnv()` and `gene_cnv_frequencies()`.
* `Ag3`: Improvements and maintenance to `snp_effects()` and `snp_allele_frequencies()`.


What's Changed
* Maintenance on SNP effects and allele frequencies functions by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/45
* Add methods for computing copy number variation by gene by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/38


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v0.5.0...v0.6.0