Malariagen-data

What's Changed
* Anopheles refactor part 6 - haplotype data by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/401
* Fix for API breakage in numpydoc_decorator by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/403


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.8.0...v7.9.0

What's Changed
* Add Python 3.11 support by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/397
* Work around slow pomegranate install by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/398
* Refactor Anopheles tests on genome sequence, genome features and sample metadata by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/399
* Upgrade bokeh to 3.1 by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/400


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.7.0...v7.8.0

Please note that this release includes stricter type checking of parameters passed into functions in the public API. If you experience TypeError exceptions and are unclear about the cause, please go ahead and raise an issue.

What's Changed
* Anopheles refactor part 5 - AnophelesSnpData by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/393


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.6.0...v7.7.0

What's Changed
* Anopheles refactor part 4 - AnophelesSampleMetadata by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/386
* Faster xarray concatenation by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/395


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.5.0...v7.6.0

What's Changed
* Drop support for Python 3.7 by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/377
* Add min and max cohort size options to haplotypes, and add support in h12, h1x and fst functions by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/379
* Anopheles refactor part 1 - AnophelesBase by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/380
* Anopheles refactor part 2 - AnophelesGenomeSequenceData by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/381
* Anopheles refactor part 3 - AnophelesGenomeFeaturesData by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/382
* Move _prep_sample_sets_param by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/383
* Add quarter cohorts in `read_cohort_metadata()` exceptions by ahernank in https://github.com/malariagen/malariagen-data-python/pull/385

New Contributors
* ahernank made their first contribution in https://github.com/malariagen/malariagen-data-python/pull/385

**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.4.0...v7.5.0

What's Changed
* Ag3.genome_sequence() - add support for joined arms by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/346
* ag3.genome_features() - add support for joined arms by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/347
* Add quarter derived from month to sample metadata. Add tests. by leehart in https://github.com/malariagen/malariagen-data-python/pull/349
* Ag3 snp_genotypes(), snp_sites(), snp_variants(), snp_calls() - support for joined arms by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/352
* Add years, sample_sets, contributors to plot_samples_interactive_map marker titles by leehart in https://github.com/malariagen/malariagen-data-python/pull/356
* ag3.haplotypes() - add support for joined arms by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/355
* plot_haplotype_clustering() fix - append extra metadata to hover data if specified by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/354
* Add Af1 site filters track for view_alignments() by leehart in https://github.com/malariagen/malariagen-data-python/pull/357
* implement iHS GWSS by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/360
* Raise error when _snp_df() transcript is not found by leehart in https://github.com/malariagen/malariagen-data-python/pull/364
* Support basemap str for plot_samples_interactive_map by leehart in https://github.com/malariagen/malariagen-data-python/pull/372
* Implement G123 gwss method by sanjaynagi in https://github.com/malariagen/malariagen-data-python/pull/369
* Type annotations and numpydoc_decorator applied to AnophelesDataResource by alimanfoo in https://github.com/malariagen/malariagen-data-python/pull/353


**Full Changelog**: https://github.com/malariagen/malariagen-data-python/compare/v7.3.1...v7.4.0