Planemo

---------------------

* Allow selection of Python version when starting managed Galaxy
(thanks to `mvdbeek`_). `Pull Request 874`_
* Change the channel priority of conda (again). (thanks to `bgruening`_).
`Pull Request 867`_
* Some small english corrections (thanks to `hexylena`_). `Pull Request 868`_
* Print the list of excluded paths when running ``ci_find_repos``
(thanks to `nsoranzo`_). `Pull Request 877`_
* Improved XSD lint reporting. `Pull Request 871`_
* Fix Planemo writing a file called ``gx_venv_None``. `Pull Request 870`_
* Update cwltool and galaxy-lib dependencies for Python 3.7 (thanks to
`nsoranzo`_). `Pull Request 864`_
* Fix to make workflow testing more robust.
`Pull Request 882`_

---------------------

---------------------

* Add commands to create Galaxy training materials (thanks to `bebatut`_).
`Pull Request 861`_
* Fix `planemo test` when TEMP env variable contain spaces (thanks to
`nsoranzo`_).
`Pull Request 851`_
* Support testing a completely remote galaxy instance (thanks to `hexylena`_).
`Pull Request 856`_
* Allow naming history from command line (thanks to `hexylena`_).
`Pull Request 860`_
* Sync galaxy.xsd from galaxy repo (thanks to `nsoranzo`_).
`Pull Request 866`_
* Fix ServeTestCase.test_shed_serve test (thanks to `nsoranzo`). bad810a_

---------------------

---------------------

* Better support for testings against different versions of Galaxy efficiently and robustly.
`Pull Request 849`_
* New database version (thanks to `bgruening`_).
`Pull Request 847`_
* Hyperlink DOIs against preferred resolver (thanks to `katrinleinweber`_).
`Pull Request 850`_
* Tests for collection inputs to workflows. `Pull Request 843`_
* Bring in Ephemeris sleep function - hopefully makes serve tests a bit more robust.
b12b117_
* More tutorial testing, tutorial updates.
016b923_, 324c776_, 2002b49_
* More isolated ``test_shed_upload.py`` tests. 72d2ca7_
* Add filetype support for workflow test inputs (thanks to `bgruening`_).
`Pull Request 842`_
* Add ``--no_shed_install`` option, to prevent shed installs as part of workflow testing.
`Pull Request 841`_
* Small docs fix (thanks to `hexylena`_). `Pull Request 848`_

---------------------

---------------------

* Make Planemo testing easier for CWL tools and workflows in various ways and update
tutorials to reflect these simplifications. `Pull Request 837`_
* Test and fix running workflow tests against externally managed Galaxy servers.
`Pull Request 833`_, `Pull Request 836`_
* Allow using URIs for inputs of workflow test. `Pull Request 840`_
* Slide Galaxy testing window to include 18.05 and drop 17.09. `Pull Request 838`_

---------------------

---------------------

* Allow optional disabling of Galaxy single user mode. `Pull Request 835`_
* Fix for path pasting options during workflow testing. `Pull Request 834`_

---------------------

---------------------

* Fix essentially all Conda_ and BioContainers_ related functionality to allow parity between
CWL_ and existing Galaxy functionality - fixes and enhances many commands including ``lint``,
``conda_install``, ``conda_env``, ``test``, ``run``, and ``mull``.
`Pull Request 828`_
* Add two new tutorials for `Conda
<http://planemo.readthedocs.io/en/latest/writing_advanced_cwl.html#dependencies-and-conda>`__
and `Container
<http://planemo.readthedocs.io/en/latest/writing_advanced_cwl.html#dependencies-and-containers>`__
development with CWL tools that mirrors the existing tutorials for Galaxy tools - including new
CWL exercises, answers, and example project templates.
347c622_
* Improve the CWL generated by the ``tool_init`` command to properly deal with
``SoftwareRequirement`` s and generate more idiomatic CWL.
`Pull Request 820`_, a5c72e3_
* Add new engine type (``--engine toil``) for testing and running CWL_ tools (requires
manually installing Toil_ with ``pip install toil`` in Planemo's environment).
`Pull Request 831`_
* Add `documentation <http://planemo.readthedocs.io/en/latest/test_format.html>`__
for the Galaxy Workflow and CWL_ test format files (includes information on configuring
various test engines).
`Pull Request 832`_
* Better default logging config for CWL development. `Pull Request 830`_
* Various fixes for the ``conda_search`` command. `Pull Request 826`_
* Fix test coverage configuration. `Pull Request 822`_
* Reorganize .travis.yml for clarity. `Pull Request 829`_
* More isolated, robust unit tests that use git_.
`Pull Request 827`_, `Pull Request 818`_
* Fix default list of best-practice Conda channels. `Pull Request 825`_
* Refactor tests to speed up quick tests - fewer buggy URLs fetched in "quick" mode.
`Pull Request 823`_
* Fix upload configuration of workflow testing to default (overrideable) external Galaxies
to not use path pasting.
`Pull Request 816`_
* Fix test number parsing for workflow tests. `Pull Request 817`_

---------------------