Planemo

---------------------

* Add option (``-r``) to the ``shed_upload`` command to recursively upload
subdirectories (thanks to E. Rasche). `Pull Request 68`_
* Fix diff formatting in test reports (thanks to E. Rasche).
`Pull Request 63`_
* Grab updated test database to speed up testing (thanks to approach from
E. Rasche and Dannon Baker). `Issue 61`_, dff4f33_
* Fix test data command-line argument name (was ``test-data`` now it is
``test_data``). 834bfb2_
* Use ``tool_data_table_conf.xml.sample`` file if
``tool_data_table_conf.xml.test`` is unavailable. Should allow some
new tools to be tested without modifying Galaxy's global
``tool_data_table_conf.xml`` file. ac4f828_

---------------------

---------------------

* Improvements to way Planemo loads its own copy of Galaxy modules to prevent
various conflicts when launching Galaxy from Planemo. `Pull Request 56`_
* Allow setting various test output options in ``~/.planemo.yml`` and disabling
JSON output. 21bb463_
* More experimental Brew and Tool Shed options that should not be considered
part of Planemo's stable API. See bit.ly/gxbrew1 for more details.
* Fix ``project_init`` for BSD tar (thanks to Nitesh Turaga for the bug
report.) a4110a8_
* Documentation fixes for tool linting command (thanks to Nicola Soranzo).
`Pull Request 51`_

---------------------

---------------------

* Moved repository URL to https://github.com/galaxyproject/planemo.
* Support for publishing to the Tool Shed. `Pull Request 6`_
* Support for producing diffs (``shed_diff``) between local repositories and
the Tool Shed (based on scripts by Peter Cock). `Pull Request 33`_
* Use tool's local test data when available - add option for configuring
``test-data`` target. `Pull Request 1`_
* Support for testing tool features dependent on cached data. 44de95c_
* Support for generating XUnit tool test reports. 82e8b1f_
* Prettier HTML reports for tool tests. 05cc9f4_
* Implement ``share_test`` command for embedding test result links in pull
requests. `Pull Request 40`_
* Fix for properly resolving links during Tool Shed publishing (thanks to Dave
Bouvier). `Pull Request 29`_
* Fix for citation linter (thanks to Michael Crusoe for the bug report). af39061_
* Fix tool scanning for tool files with fewer than 10 lines (thanks to Dan
Blankenberg). a2c13e4_
* Automate more of Travis CI testing so the scripts added to tool repository
can be smaller. 20a8680_
* Documentation fixes for Travis CI (thanks to Peter Cock). `Pull Request 22`_,
`Pull Request 23`_
* Various documentation fixes (thanks to Martin Čech). 36f7cb1_, b9232e5_
* Various smaller fixes for Docker support, tool linting, and documentation.

---------------------

---------------------

* Initial work on the project - commands for testing, linting, serving Galaxy
tools - and more experimental features involving Docker and Homebrew. 7d07782_

.. github_links
.. _Pull Request 1457: https://github.com/galaxyproject/planemo/pull/1457
.. _Pull Request 1471: https://github.com/galaxyproject/planemo/pull/1471
.. _Pull Request 1458: https://github.com/galaxyproject/planemo/pull/1458
.. _Pull Request 1460: https://github.com/galaxyproject/planemo/pull/1460
.. _Pull Request 1462: https://github.com/galaxyproject/planemo/pull/1462
.. _Pull Request 1463: https://github.com/galaxyproject/planemo/pull/1463
.. _Pull Request 1466: https://github.com/galaxyproject/planemo/pull/1466
.. _Pull Request 1461: https://github.com/galaxyproject/planemo/pull/1461
.. _Pull Request 1453: https://github.com/galaxyproject/planemo/pull/1453
.. _Pull Request 1420: https://github.com/galaxyproject/planemo/pull/1420
.. _Pull Request 1445: https://github.com/galaxyproject/planemo/pull/1445
.. _Pull Request 1450: https://github.com/galaxyproject/planemo/pull/1450
.. _Pull Request 1441: https://github.com/galaxyproject/planemo/pull/1441
.. _Pull Request 1447: https://github.com/galaxyproject/planemo/pull/1447
.. _Pull Request 1444: https://github.com/galaxyproject/planemo/pull/1444
.. _Pull Request 1443: https://github.com/galaxyproject/planemo/pull/1443
.. _Pull Request 1442: https://github.com/galaxyproject/planemo/pull/1442
.. _Pull Request 1439: https://github.com/galaxyproject/planemo/pull/1439
.. _Pull Request 1440: https://github.com/galaxyproject/planemo/pull/1440
.. _Pull Request 1437: https://github.com/galaxyproject/planemo/pull/1437
.. _Pull Request 1433: https://github.com/galaxyproject/planemo/pull/1433
.. _Pull Request 1430: https://github.com/galaxyproject/planemo/pull/1430
.. _Pull Request 1428: https://github.com/galaxyproject/planemo/pull/1428
.. _Pull Request 1427: https://github.com/galaxyproject/planemo/pull/1427
.. _Pull Request 1425: https://github.com/galaxyproject/planemo/pull/1425
.. _Pull Request 1424: https://github.com/galaxyproject/planemo/pull/1424
.. _Pull Request 1422: https://github.com/galaxyproject/planemo/pull/1422
.. _Pull Request 1419: https://github.com/galaxyproject/planemo/pull/1419
.. _Pull Request 1416: https://github.com/galaxyproject/planemo/pull/1416
.. _Pull Request 1388: https://github.com/galaxyproject/planemo/pull/1388
.. _Pull Request 1412: https://github.com/galaxyproject/planemo/pull/1412
.. _Pull Request 1410: https://github.com/galaxyproject/planemo/pull/1410
.. _Pull Request 1408: https://github.com/galaxyproject/planemo/pull/1408
.. _Pull Request 1407: https://github.com/galaxyproject/planemo/pull/1407
.. _Pull Request 1406: https://github.com/galaxyproject/planemo/pull/1406
.. _Pull Request 1401: https://github.com/galaxyproject/planemo/pull/1401
.. _Pull Request 1402: https://github.com/galaxyproject/planemo/pull/1402
.. _Pull Request 1398: https://github.com/galaxyproject/planemo/pull/1398
.. _Pull Request 1400: https://github.com/galaxyproject/planemo/pull/1400
.. _Pull Request 1399: https://github.com/galaxyproject/planemo/pull/1399
.. _Pull Request 1396: https://github.com/galaxyproject/planemo/pull/1396
.. _Pull Request 1397: https://github.com/galaxyproject/planemo/pull/1397
.. _Pull Request 1395: https://github.com/galaxyproject/planemo/pull/1395
.. _Pull Request 1394: https://github.com/galaxyproject/planemo/pull/1394
.. _Pull Request 1393: https://github.com/galaxyproject/planemo/pull/1393
.. _Pull Request 1391: https://github.com/galaxyproject/planemo/pull/1391
.. _Pull Request 1389: https://github.com/galaxyproject/planemo/pull/1389
.. _Pull Request 1263: https://github.com/galaxyproject/planemo/pull/1263
.. _Pull Request 1387: https://github.com/galaxyproject/planemo/pull/1387
.. _Pull Request 1385: https://github.com/galaxyproject/planemo/pull/1385
.. _Pull Request 1384: https://github.com/galaxyproject/planemo/pull/1384
.. _Pull Request 1383: https://github.com/galaxyproject/planemo/pull/1383
.. _Pull Request 1382: https://github.com/galaxyproject/planemo/pull/1382
.. _Pull Request 1355: https://github.com/galaxyproject/planemo/pull/1355
.. _Pull Request 1378: https://github.com/galaxyproject/planemo/pull/1378
.. _Pull Request 1379: https://github.com/galaxyproject/planemo/pull/1379
.. _Pull Request 1377: https://github.com/galaxyproject/planemo/pull/1377
.. _Pull Request 1375: https://github.com/galaxyproject/planemo/pull/1375
.. _Pull Request 1374: https://github.com/galaxyproject/planemo/pull/1374
.. _Pull Request 1373: https://github.com/galaxyproject/planemo/pull/1373
.. _Pull Request 1372: https://github.com/galaxyproject/planemo/pull/1372
.. _Pull Request 1371: https://github.com/galaxyproject/planemo/pull/1371
.. _Pull Request 1369: https://github.com/galaxyproject/planemo/pull/1369
.. _Pull Request 1370: https://github.com/galaxyproject/planemo/pull/1370
.. _Pull Request 1364: https://github.com/galaxyproject/planemo/pull/1364
.. _Pull Request 1358: https://github.com/galaxyproject/planemo/pull/1358
.. _Pull Request 1357: https://github.com/galaxyproject/planemo/pull/1357
.. _Pull Request 1265: https://github.com/galaxyproject/planemo/pull/1265
.. _Pull Request 1350: https://github.com/galaxyproject/planemo/pull/1350
.. _Pull Request 1275: https://github.com/galaxyproject/planemo/pull/1275
.. _Pull Request 1347: https://github.com/galaxyproject/planemo/pull/1347
.. _Pull Request 1348: https://github.com/galaxyproject/planemo/pull/1348
.. _Pull Request 1346: https://github.com/galaxyproject/planemo/pull/1346
.. _Pull Request 1344: https://github.com/galaxyproject/planemo/pull/1344
.. _Pull Request 1338: https://github.com/galaxyproject/planemo/pull/1338
.. _Pull Request 1337: https://github.com/galaxyproject/planemo/pull/1337
.. _Pull Request 1334: https://github.com/galaxyproject/planemo/pull/1334
.. _Pull Request 1327: https://github.com/galaxyproject/planemo/pull/1327
.. _Pull Request 1332: https://github.com/galaxyproject/planemo/pull/1332
.. _Pull Request 1330: https://github.com/galaxyproject/planemo/pull/1330
.. _Pull Request 1329: https://github.com/galaxyproject/planemo/pull/1329
.. _Pull Request 1326: https://github.com/galaxyproject/planemo/pull/1326
.. _Pull Request 1322: https://github.com/galaxyproject/planemo/pull/1322
.. _Pull Request 1325: https://github.com/galaxyproject/planemo/pull/1325
.. _Pull Request 1320: https://github.com/galaxyproject/planemo/pull/1320
.. _Pull Request 1314: https://github.com/galaxyproject/planemo/pull/1314
.. _Pull Request 1313: https://github.com/galaxyproject/planemo/pull/1313
.. _Pull Request 1312: https://github.com/galaxyproject/planemo/pull/1312
.. _Pull Request 1310: https://github.com/galaxyproject/planemo/pull/1310
.. _Pull Request 1308: https://github.com/galaxyproject/planemo/pull/1308
.. _Pull Request 1302: https://github.com/galaxyproject/planemo/pull/1302
.. _Pull Request 1303: https://github.com/galaxyproject/planemo/pull/1303
.. _Pull Request 1304: https://github.com/galaxyproject/planemo/pull/1304
.. _Pull Request 1305: https://github.com/galaxyproject/planemo/pull/1305
.. _Pull Request 1306: https://github.com/galaxyproject/planemo/pull/1306
.. _Pull Request 1307: https://github.com/galaxyproject/planemo/pull/1307
.. _Pull Request 1247: https://github.com/galaxyproject/planemo/pull/1247
.. _Pull Request 1249: https://github.com/galaxyproject/planemo/pull/1249
.. _Pull Request 1255: https://github.com/galaxyproject/planemo/pull/1255
.. _Pull Request 1257: https://github.com/galaxyproject/planemo/pull/1257
.. _Pull Request 1259: https://github.com/galaxyproject/planemo/pull/1259
.. _Pull Request 1260: https://github.com/galaxyproject/planemo/pull/1260
.. _Pull Request 1262: https://github.com/galaxyproject/planemo/pull/1262
.. _Pull Request 1212: https://github.com/galaxyproject/planemo/pull/1212
.. _Pull Request 1264: https://github.com/galaxyproject/planemo/pull/1264
.. _Pull Request 1232: https://github.com/galaxyproject/planemo/pull/1232
.. _Pull Request 1270: https://github.com/galaxyproject/planemo/pull/1270
.. _Pull Request 1274: https://github.com/galaxyproject/planemo/pull/1274
.. _Pull Request 1278: https://github.com/galaxyproject/planemo/pull/1278
.. _Pull Request 1277: https://github.com/galaxyproject/planemo/pull/1277
.. _Pull Request 1279: https://github.com/galaxyproject/planemo/pull/1279
.. _Pull Request 1281: https://github.com/galaxyproject/planemo/pull/1281
.. _Pull Request 1283: https://github.com/galaxyproject/planemo/pull/1283
.. _Pull Request 1280: https://github.com/galaxyproject/planemo/pull/1280
.. _Pull Request 1284: https://github.com/galaxyproject/planemo/pull/1284
.. _Pull Request 1287: https://github.com/galaxyproject/planemo/pull/1287
.. _Pull Request 1288: https://github.com/galaxyproject/planemo/pull/1288
.. _Pull Request 1285: https://github.com/galaxyproject/planemo/pull/1285
.. _Pull Request 1271: https://github.com/galaxyproject/planemo/pull/1271
.. _Pull Request 1291: https://github.com/galaxyproject/planemo/pull/1291
.. _Pull Request 1227: https://github.com/galaxyproject/planemo/pull/1227
.. _Pull Request 1292: https://github.com/galaxyproject/planemo/pull/1292
.. _Pull Request 1293: https://github.com/galaxyproject/planemo/pull/1293
.. _Pull Request 1276: https://github.com/galaxyproject/planemo/pull/1276
.. _Pull Request 1295: https://github.com/galaxyproject/planemo/pull/1295
.. _Pull Request 1294: https://github.com/galaxyproject/planemo/pull/1294
.. _Pull Request 1296: https://github.com/galaxyproject/planemo/pull/1296
.. _Pull Request 1298: https://github.com/galaxyproject/planemo/pull/1298
.. _Pull Request 1299: https://github.com/galaxyproject/planemo/pull/1299
.. _Pull Request 1297: https://github.com/galaxyproject/planemo/pull/1297
.. _Pull Request 1244: https://github.com/galaxyproject/planemo/pull/1244
.. _Pull Request 1242: https://github.com/galaxyproject/planemo/pull/1242
.. _Pull Request 1241: https://github.com/galaxyproject/planemo/pull/1241
.. _Pull Request 1239: https://github.com/galaxyproject/planemo/pull/1239
.. _Pull Request 1237: https://github.com/galaxyproject/planemo/pull/1237
.. _Pull Request 1230: https://github.com/galaxyproject/planemo/pull/1230
.. _Pull Request 1228: https://github.com/galaxyproject/planemo/pull/1228
.. _Pull Request 1224: https://github.com/galaxyproject/planemo/pull/1224
.. _Pull Request 1226: https://github.com/galaxyproject/planemo/pull/1226
.. _Pull Request 1222: https://github.com/galaxyproject/planemo/pull/1222
.. _Pull Request 1217: https://github.com/galaxyproject/planemo/pull/1217
.. _Pull Request 1213: https://github.com/galaxyproject/planemo/pull/1213
.. _Pull Request 1214: https://github.com/galaxyproject/planemo/pull/1214
.. _Pull Request 1215: https://github.com/galaxyproject/planemo/pull/1215
.. _Pull Request 1209: https://github.com/galaxyproject/planemo/pull/1209
.. _Pull Request 1206: https://github.com/galaxyproject/planemo/pull/1206
.. _Pull Request 1207: https://github.com/galaxyproject/planemo/pull/1207
.. _Pull Request 1205: https://github.com/galaxyproject/planemo/pull/1205
.. _Pull Request 1198: https://github.com/galaxyproject/planemo/pull/1198
.. _Pull Request 1140: https://github.com/galaxyproject/planemo/pull/1140
.. _Pull Request 1200: https://github.com/galaxyproject/planemo/pull/1200
.. _Pull Request 1201: https://github.com/galaxyproject/planemo/pull/1201
.. _Pull Request 1188: https://github.com/galaxyproject/planemo/pull/1188
.. _Pull Request 1193: https://github.com/galaxyproject/planemo/pull/1193
.. _Pull Request 1195: https://github.com/galaxyproject/planemo/pull/1195
.. _Pull Request 1196: https://github.com/galaxyproject/planemo/pull/1196
.. _Pull Request 1184: https://github.com/galaxyproject/planemo/pull/1184
.. _Pull Request 1187: https://github.com/galaxyproject/planemo/pull/1187
.. _Pull Request 1151: https://github.com/galaxyproject/planemo/pull/1151
.. _Pull Request 1153: https://github.com/galaxyproject/planemo/pull/1153
.. _Pull Request 1179: https://github.com/galaxyproject/planemo/pull/1179
.. _Pull Request 1180: https://github.com/galaxyproject/planemo/pull/1180
.. _Pull Request 1182: https://github.com/galaxyproject/planemo/pull/1182
.. _Pull Request 1170: https://github.com/galaxyproject/planemo/pull/1170
.. _Pull Request 1171: https://github.com/galaxyproject/planemo/pull/1171
.. _Pull Request 1172: https://github.com/galaxyproject/planemo/pull/1172
.. _Pull Request 1173: https://github.com/galaxyproject/planemo/pull/1173
.. _Pull Request 1174: https://github.com/galaxyproject/planemo/pull/1174
.. _Pull Request 1177: https://github.com/galaxyproject/planemo/pull/1177
.. _Pull Request 1169: https://github.com/galaxyproject/planemo/pull/1169
.. _Pull Request 1165: https://github.com/galaxyproject/planemo/pull/1165
.. _Pull Request 1164: https://github.com/galaxyproject/planemo/pull/1164
.. _Pull Request 1157: https://github.com/galaxyproject/planemo/pull/1157
.. _Pull Request 1156: https://github.com/galaxyproject/planemo/pull/1156
.. _Pull Request 1154: https://github.com/galaxyproject/planemo/pull/1154
.. _Pull Request 1152: https://github.com/galaxyproject/planemo/pull/1152
.. _Pull Request 1146: https://github.com/galaxyproject/planemo/pull/1146
.. _Pull Request 1145: https://github.com/galaxyproject/planemo/pull/1145
.. _Pull Request 1144: https://github.com/galaxyproject/planemo/pull/1144
.. _Pull Request 1142: https://github.com/galaxyproject/planemo/pull/1142
.. _Pull Request 1095: https://github.com/galaxyproject/planemo/pull/1095
.. _Pull Request 1135: https://github.com/galaxyproject/planemo/pull/1135
.. _Pull Request 1134: https://github.com/galaxyproject/planemo/pull/1134
.. _Pull Request 1133: https://github.com/galaxyproject/planemo/pull/1133
.. _Pull Request 1128: https://github.com/galaxyproject/planemo/pull/1128
.. _Pull Request 1127: https://github.com/galaxyproject/planemo/pull/1127
.. _Pull Request 1126: https://github.com/galaxyproject/planemo/pull/1126
.. _Pull Request 1125: https://github.com/galaxyproject/planemo/pull/1125
.. _Pull Request 1124: https://github.com/galaxyproject/planemo/pull/1124
.. _Pull Request 1123: https://github.com/galaxyproject/planemo/pull/1123
.. _Pull Request 1064: https://github.com/galaxyproject/planemo/pull/1064
.. _Pull Request 1066: https://github.com/galaxyproject/planemo/pull/1066
.. _Pull Request 1068: https://github.com/galaxyproject/planemo/pull/1068
.. _Pull Request 1072: https://github.com/galaxyproject/planemo/pull/1072
.. _Pull Request 1074: https://github.com/galaxyproject/planemo/pull/1074
.. _Pull Request 1076: https://github.com/galaxyproject/planemo/pull/1076
.. _Pull Request 1079: https://github.com/galaxyproject/planemo/pull/1079
.. _Pull Request 1083: https://github.com/galaxyproject/planemo/pull/1083
.. _Pull Request 1086: https://github.com/galaxyproject/planemo/pull/1086
.. _Pull Request 1091: https://github.com/galaxyproject/planemo/pull/1091
.. _Pull Request 1093: https://github.com/galaxyproject/planemo/pull/1093
.. _Pull Request 1094: https://github.com/galaxyproject/planemo/pull/1094
.. _Pull Request 1096: https://github.com/galaxyproject/planemo/pull/1096
.. _Pull Request 1099: https://github.com/galaxyproject/planemo/pull/1099
.. _Pull Request 1101: https://github.com/galaxyproject/planemo/pull/1101
.. _Pull Request 1102: https://github.com/galaxyproject/planemo/pull/1102
.. _Pull Request 1108: https://github.com/galaxyproject/planemo/pull/1108
.. _Pull Request 1110: https://github.com/galaxyproject/planemo/pull/1110
.. _Pull Request 1114: https://github.com/galaxyproject/planemo/pull/1114
.. _Pull Request 1115: https://github.com/galaxyproject/planemo/pull/1115
.. _Pull Request 1116: https://github.com/galaxyproject/planemo/pull/1116
.. _Pull Request 1118: https://github.com/galaxyproject/planemo/pull/1118
.. _Pull Request 1120: https://github.com/galaxyproject/planemo/pull/1120
.. _Pull Request 1121: https://github.com/galaxyproject/planemo/pull/1121
.. _Pull Request 821: https://github.com/galaxyproject/planemo/pull/821
.. _Pull Request 1052: https://github.com/galaxyproject/planemo/pull/1052
.. _Pull Request 1061: https://github.com/galaxyproject/planemo/pull/1061
.. _Pull Request 1062: https://github.com/galaxyproject/planemo/pull/1062
.. _Pull Request 1060: https://github.com/galaxyproject/planemo/pull/1060
.. _Pull Request 1059: https://github.com/galaxyproject/planemo/pull/1059
.. _Pull Request 1058: https://github.com/galaxyproject/planemo/pull/1058
.. _Pull Request 1051: https://github.com/galaxyproject/planemo/pull/1051
.. _Pull Request 1049: https://github.com/galaxyproject/planemo/pull/1049
.. _Pull Request 1046: https://github.com/galaxyproject/planemo/pull/1046
.. _Pull Request 1044: https://github.com/galaxyproject/planemo/pull/1044
.. _Pull Request 1043: https://github.com/galaxyproject/planemo/pull/1043
.. _Pull Request 1042: https://github.com/galaxyproject/planemo/pull/1042
.. _Pull Request 1041: https://github.com/galaxyproject/planemo/pull/1041
.. _Pull Request 1040: https://github.com/galaxyproject/planemo/pull/1040
.. _Pull Request 1038: https://github.com/galaxyproject/planemo/pull/1038
.. _Pull Request 1037: https://github.com/galaxyproject/planemo/pull/1037
.. _Pull Request 1036: https://github.com/galaxyproject/planemo/pull/1036
.. _Pull Request 1034: https://github.com/galaxyproject/planemo/pull/1034
.. _Pull Request 1032: https://github.com/galaxyproject/planemo/pull/1032
.. _Pull Request 1029: https://github.com/galaxyproject/planemo/pull/1029
.. _Pull Request 1028: https://github.com/galaxyproject/planemo/pull/1028
.. _Pull Request 1031: https://github.com/galaxyproject/planemo/pull/1031
.. _Pull Request 1026: https://github.com/galaxyproject/planemo/pull/1026
.. _Pull Request 994: https://github.com/galaxyproject/planemo/pull/994
.. _Pull Request 993: https://github.com/galaxyproject/planemo/pull/993
.. _Pull Request 1001: https://github.com/galaxyproject/planemo/pull/1001
.. _Pull Request 1003: https://github.com/galaxyproject/planemo/pull/1003
.. _Pull Request 900: https://github.com/galaxyproject/planemo/pull/900
.. _Pull Request 1008: https://github.com/galaxyproject/planemo/pull/1008
.. _Pull Request 1006: https://github.com/galaxyproject/planemo/pull/1006
.. _Pull Request 1011: https://github.com/galaxyproject/planemo/pull/1011
.. _Pull Request 1017: https://github.com/galaxyproject/planemo/pull/1017
.. _Pull Request 1015: https://github.com/galaxyproject/planemo/pull/1015
.. _Pull Request 1013: https://github.com/galaxyproject/planemo/pull/1013
.. _Pull Request 1020: https://github.com/galaxyproject/planemo/pull/1020
.. _Pull Request 1021: https://github.com/galaxyproject/planemo/pull/1021
.. _Pull Request 1022: https://github.com/galaxyproject/planemo/pull/1022
.. _Pull Request 1023: https://github.com/galaxyproject/planemo/pull/1023
.. _Pull Request 1025: https://github.com/galaxyproject/planemo/pull/1025
.. _Pull Request 1024: https://github.com/galaxyproject/planemo/pull/1024
.. _Pull Request 991: https://github.com/galaxyproject/planemo/pull/991
.. _Pull Request 988: https://github.com/galaxyproject/planemo/pull/988
.. _Pull Request 989: https://github.com/galaxyproject/planemo/pull/989
.. _Pull Request 985: https://github.com/galaxyproject/planemo/pull/985
.. _Pull Request 984: https://github.com/galaxyproject/planemo/pull/984
.. _Pull Request 986: https://github.com/galaxyproject/planemo/pull/986
.. _Pull Request 983: https://github.com/galaxyproject/planemo/pull/983
.. _Pull Request 982: https://github.com/galaxyproject/planemo/pull/982
.. _Pull Request 980: https://github.com/galaxyproject/planemo/pull/980
.. _Pull Request 978: https://github.com/galaxyproject/planemo/pull/978
.. _Pull Request 979: https://github.com/galaxyproject/planemo/pull/979
.. _Pull Request 977: https://github.com/galaxyproject/planemo/pull/977
.. _Pull Request 975: https://github.com/galaxyproject/planemo/pull/975
.. _Pull Request 974: https://github.com/galaxyproject/planemo/pull/974
.. _Pull Request 976: https://github.com/galaxyproject/planemo/pull/976
.. _Pull Request 972: https://github.com/galaxyproject/planemo/pull/972
.. _Pull Request 973: https://github.com/galaxyproject/planemo/pull/973
.. _Pull Request 971: https://github.com/galaxyproject/planemo/pull/971
.. _Pull Request 970: https://github.com/galaxyproject/planemo/pull/970
.. _Pull Request 968: https://github.com/galaxyproject/planemo/pull/968
.. _1ab8530: https://github.com/galaxyproject/planemo/commit/1ab8530
.. _Pull Request 966: https://github.com/galaxyproject/planemo/pull/966
.. _Pull Request 964: https://github.com/galaxyproject/planemo/pull/964
.. _Pull Request 963: https://github.com/galaxyproject/planemo/pull/963
.. _Pull Request 959: https://github.com/galaxyproject/planemo/pull/959
.. _Pull Request 958: https://github.com/galaxyproject/planemo/pull/958
.. _Pull Request 950: https://github.com/galaxyproject/planemo/pull/950
.. _Pull Request 944: https://github.com/galaxyproject/planemo/pull/944
.. _Pull Request 926: https://github.com/galaxyproject/planemo/pull/926
.. _Pull Request 937: https://github.com/galaxyproject/planemo/pull/937
.. _Pull Request 938: https://github.com/galaxyproject/planemo/pull/938
.. _Pull Request 943: https://github.com/galaxyproject/planemo/pull/943
.. _Pull Request 940: https://github.com/galaxyproject/planemo/pull/940
.. _Pull Request 937: https://github.com/galaxyproject/planemo/pull/937
.. _Pull Request 935: https://github.com/galaxyproject/planemo/pull/935
.. _Pull Request 931: https://github.com/galaxyproject/planemo/pull/931
.. _Pull Request 930: https://github.com/galaxyproject/planemo/pull/930
.. _Pull Request 913: https://github.com/galaxyproject/planemo/pull/913
.. _Pull Request 917: https://github.com/galaxyproject/planemo/pull/917
.. _Pull Request 921: https://github.com/galaxyproject/planemo/pull/921
.. _Pull Request 918: https://github.com/galaxyproject/planemo/pull/918
.. _Pull Request 924: https://github.com/galaxyproject/planemo/pull/924
.. _Pull Request 925: https://github.com/galaxyproject/planemo/pull/925
.. _Pull Request 912: https://github.com/galaxyproject/planemo/pull/912
.. _Pull Request 915: https://github.com/galaxyproject/planemo/pull/915
.. _Pull Request 914: https://github.com/galaxyproject/planemo/pull/914
.. _07dc6e0: https://github.com/galaxyproject/planemo/commit/07dc6e0
.. _Pull Request 910: https://github.com/galaxyproject/planemo/pull/910
.. _Pull Request 909: https://github.com/galaxyproject/planemo/pull/909
.. _Pull Request 908: https://github.com/galaxyproject/planemo/pull/908
.. _Pull Request 907: https://github.com/galaxyproject/planemo/pull/907
.. _Pull Request 906: https://github.com/galaxyproject/planemo/pull/906
.. _Pull Request 902: https://github.com/galaxyproject/planemo/pull/902
.. _Pull Request 895: https://github.com/galaxyproject/planemo/pull/895
.. _Issue 845: https://github.com/galaxyproject/planemo/issues/845
.. _Issue 898: https://github.com/galaxyproject/planemo/issues/898
.. _Pull Request 899: https://github.com/galaxyproject/planemo/pull/899
.. _Pull Request 896: https://github.com/galaxyproject/planemo/pull/896
.. _Pull Request 894: https://github.com/galaxyproject/planemo/pull/894
.. _Pull Request 876: https://github.com/galaxyproject/planemo/pull/876
.. _Pull Request 893: https://github.com/galaxyproject/planemo/pull/893
.. _Pull Request 892: https://github.com/galaxyproject/planemo/pull/892
.. _Pull Request 891: https://github.com/galaxyproject/planemo/pull/891
.. _Pull Request 889: https://github.com/galaxyproject/planemo/pull/889
.. _Pull Request 888: https://github.com/galaxyproject/planemo/pull/888
.. _Pull Request 887: https://github.com/galaxyproject/planemo/pull/887
.. _Pull Request 882: https://github.com/galaxyproject/planemo/pull/882
.. _Pull Request 877: https://github.com/galaxyproject/planemo/pull/877
.. _Pull Request 874: https://github.com/galaxyproject/planemo/pull/874
.. _Pull Request 871: https://github.com/galaxyproject/planemo/pull/871
.. _Pull Request 870: https://github.com/galaxyproject/planemo/pull/870
.. _Pull Request 864: https://github.com/galaxyproject/planemo/pull/864
.. _Pull Request 867: https://github.com/galaxyproject/planemo/pull/867
.. _Pull Request 868: https://github.com/galaxyproject/planemo/pull/868
.. _bad810a: https://github.com/galaxyproject/planemo/commit/bad810a
.. _Pull Request 851: https://github.com/galaxyproject/planemo/pull/851
.. _Pull Request 856: https://github.com/galaxyproject/planemo/pull/856
.. _Pull Request 860: https://github.com/galaxyproject/planemo/pull/860
.. _Pull Request 866: https://github.com/galaxyproject/planemo/pull/866
.. _Pull Request 861: https://github.com/galaxyproject/planemo/pull/861
.. _324c776: https://github.com/galaxyproject/planemo/commit/324c776
.. _72d2ca7: https://github.com/galaxyproject/planemo/commit/72d2ca7
.. _b12b117: https://github.com/galaxyproject/planemo/commit/b12b117
.. _016b923: https://github.com/galaxyproject/planemo/commit/016b923
.. _2002b49: https://github.com/galaxyproject/planemo/commit/2002b49
.. _Pull Request 843: https://github.com/galaxyproject/planemo/pull/843
.. _Pull Request 842: https://github.com/galaxyproject/planemo/pull/842
.. _Pull Request 841: https://github.com/galaxyproject/planemo/pull/841
.. _Pull Request 847: https://github.com/galaxyproject/planemo/pull/847
.. _Pull Request 848: https://github.com/galaxyproject/planemo/pull/848
.. _Pull Request 849: https://github.com/galaxyproject/planemo/pull/849
.. _Pull Request 850: https://github.com/galaxyproject/planemo/pull/850
.. _Pull Request 836: https://github.com/galaxyproject/planemo/pull/836
.. _Pull Request 833: https://github.com/galaxyproject/planemo/pull/833
.. _Pull Request 837: https://github.com/galaxyproject/planemo/pull/837
.. _Pull Request 840: https://github.com/galaxyproject/planemo/pull/840
.. _Pull Request 838: https://github.com/galaxyproject/planemo/pull/838
.. _Pull Request 834: https://github.com/galaxyproject/planemo/pull/834
.. _Pull Request 835: https://github.com/galaxyproject/planemo/pull/835
.. _347c622: https://github.com/galaxyproject/planemo/commit/347c622
.. _Pull Request 832: https://github.com/galaxyproject/planemo/pull/832
.. _Pull Request 831: https://github.com/galaxyproject/planemo/pull/831
.. _Pull Request 830: https://github.com/galaxyproject/planemo/pull/830
.. _Pull Request 829: https://github.com/galaxyproject/planemo/pull/829
.. _Pull Request 828: https://github.com/galaxyproject/planemo/pull/828
.. _Pull Request 826: https://github.com/galaxyproject/planemo/pull/826
.. _Pull Request 827: https://github.com/galaxyproject/planemo/pull/827
.. _Pull Request 825: https://github.com/galaxyproject/planemo/pull/825
.. _Pull Request 820: https://github.com/galaxyproject/planemo/pull/820
.. _Pull Request 823: https://github.com/galaxyproject/planemo/pull/823
.. _Pull Request 822: https://github.com/galaxyproject/planemo/pull/822
.. _a5c72e3: https://github.com/galaxyproject/planemo/commit/a5c72e3
.. _Pull Request 818: https://github.com/galaxyproject/planemo/pull/818
.. _Pull Request 816: https://github.com/galaxyproject/planemo/pull/816
.. _Pull Request 817: https://github.com/galaxyproject/planemo/pull/817
.. _Pull Request 795: https://github.com/galaxyproject/planemo/pull/795
.. _Pull Request 799: https://github.com/galaxyproject/planemo/pull/799
.. _Pull Request 800: https://github.com/galaxyproject/planemo/pull/800
.. _Pull Request 781: https://github.com/galaxyproject/planemo/pull/781
.. _Pull Request 801: https://github.com/galaxyproject/planemo/pull/801
.. _Pull Request 802: https://github.com/galaxyproject/planemo/pull/802
.. _Pull Request 803: https://github.com/galaxyproject/planemo/pull/803
.. _Pull Request 805: https://github.com/galaxyproject/planemo/pull/805
.. _Pull Request 806: https://github.com/galaxyproject/planemo/pull/806
.. _Pull Request 809: https://github.com/galaxyproject/planemo/pull/809
.. _Pull Request 810: https://github.com/galaxyproject/planemo/pull/810
.. _Pull Request 787: https://github.com/galaxyproject/planemo/pull/787
.. _Pull Request 792: https://github.com/galaxyproject/planemo/pull/792
.. _dc443d6: https://github.com/galaxyproject/planemo/commit/dc443d6
.. _8cfe9e9: https://github.com/galaxyproject/planemo/commit/8cfe9e9
.. _41f7df1: https://github.com/galaxyproject/planemo/commit/41f7df1
.. _Pull Request 790: https://github.com/galaxyproject/planemo/pull/790
.. _Pull Request 776: https://github.com/galaxyproject/planemo/pull/776
.. _Pull Request 774: https://github.com/galaxyproject/planemo/pull/774
.. _Pull Request 773: https://github.com/galaxyproject/planemo/pull/773
.. _Pull Request 771: https://github.com/galaxyproject/planemo/pull/771
.. _Pull Request 770: https://github.com/galaxyproject/planemo/pull/770
.. _Pull Request 769: https://github.com/galaxyproject/planemo/pull/769
.. _Pull Request 768: https://github.com/galaxyproject/planemo/pull/768
.. _Pull Request 764: https://github.com/galaxyproject/planemo/pull/764
.. _Pull Request 761: https://github.com/galaxyproject/planemo/pull/761
.. _Pull Request 759: https://github.com/galaxyproject/planemo/pull/759
.. _Pull Request 756: https://github.com/galaxyproject/planemo/pull/756
.. _Pull Request 753: https://github.com/galaxyproject/planemo/pull/753
.. _Pull Request 747: https://github.com/galaxyproject/planemo/pull/747
.. _Pull Request 745: https://github.com/galaxyproject/planemo/pull/745
.. _Pull Request 743: https://github.com/galaxyproject/planemo/pull/743
.. _Pull Request 739: https://github.com/galaxyproject/planemo/pull/739
.. _Pull Request 738: https://github.com/galaxyproject/planemo/pull/738
.. _Pull Request 725: https://github.com/galaxyproject/planemo/pull/725
.. _Pull Request 727: https://github.com/galaxyproject/planemo/pull/727
.. _Pull Request 729: https://github.com/galaxyproject/planemo/pull/729
.. _Pull Request 730: https://github.com/galaxyproject/planemo/pull/730
.. _Pull Request 731: https://github.com/galaxyproject/planemo/pull/731
.. _Pull Request 733: https://github.com/galaxyproject/planemo/pull/733
.. _Pull Request 732: https://github.com/galaxyproject/planemo/pull/732
.. _Pull Request 704: https://github.com/galaxyproject/planemo/pull/704
.. _Pull Request 709: https://github.com/galaxyproject/planemo/pull/709
.. _Pull Request 715: https://github.com/galaxyproject/planemo/pull/715
.. _Pull Request 716: https://github.com/galaxyproject/planemo/pull/716
.. _Pull Request 720: https://github.com/galaxyproject/planemo/pull/720
.. _Pull Request 723: https://github.com/galaxyproject/planemo/pull/723
.. _8a608e0: https://github.com/galaxyproject/planemo/commit/8a608e0
.. _ecc1bc2: https://github.com/galaxyproject/planemo/commit/ecc1bc2
.. _Pull Request 702: https://github.com/galaxyproject/planemo/pull/702
.. _Pull Request 701: https://github.com/galaxyproject/planemo/pull/701
.. _Pull Request 699: https://github.com/galaxyproject/planemo/pull/699
.. _91b6fa0: https://github.com/galaxyproject/planemo/commit/91b6fa0
.. _904d77a: https://github.com/galaxyproject/planemo/commit/904d77a
.. _9636682: https://github.com/galaxyproject/planemo/commit/9636682
.. _475104c: https://github.com/galaxyproject/planemo/commit/475104c
.. _Pull Request 684: https://github.com/galaxyproject/planemo/pull/684
.. _Pull Request 687: https://github.com/galaxyproject/planemo/pull/687
.. _Pull Request 688: https://github.com/galaxyproject/planemo/pull/688
.. _Pull Request 689: https://github.com/galaxyproject/planemo/pull/689
.. _Pull Request 690: https://github.com/galaxyproject/planemo/pull/690
.. _Issue 494: https://github.com/galaxyproject/planemo/issues/494
.. _Pull Request 665: https://github.com/galaxyproject/planemo/pull/665
.. _Pull Request 675: https://github.com/galaxyproject/planemo/pull/675
.. _Pull Request 680: https://github.com/galaxyproject/planemo/pull/680
.. _Pull Request 682: https://github.com/galaxyproject/planemo/pull/682
.. _Pull Request 683: https://github.com/galaxyproject/planemo/pull/683
.. _Pull Request 662: https://github.com/galaxyproject/planemo/pull/662
.. _Pull Request 665: https://github.com/galaxyproject/planemo/pull/665
.. _Pull Request 664: https://github.com/galaxyproject/planemo/pull/664
.. _84c4a73: https://github.com/galaxyproject/planemo/commit/84c4a73
.. _32f41c9: https://github.com/galaxyproject/planemo/commit/32f41c9
.. _3129216: https://github.com/galaxyproject/planemo/commit/3129216
.. _b4ae44d: https://github.com/galaxyproject/planemo/commit/b4ae44d
.. _3c95b7b: https://github.com/galaxyproject/planemo/commit/3c95b7b
.. _06bcf19: https://github.com/galaxyproject/planemo/commit/06bcf19
.. _525de8f: https://github.com/galaxyproject/planemo/commit/525de8f
.. _9867e56: https://github.com/galaxyproject/planemo/commit/9867e56
.. _ce0dc4e: https://github.com/galaxyproject/planemo/commit/ce0dc4e
.. _4c0f100: https://github.com/galaxyproject/planemo/commit/4c0f100
.. _04238d3: https://github.com/galaxyproject/planemo/commit/04238d3
.. _ced5ce2: https://github.com/galaxyproject/planemo/commit/ced5ce2
.. _9ab4a0d: https://github.com/galaxyproject/planemo/commit/9ab4a0d
.. _Pull Request 640: https://github.com/galaxyproject/planemo/pull/640
.. _0a1abfe: https://github.com/galaxyproject/planemo/commit/0a1abfe
.. _Pull Request 649: https://github.com/galaxyproject/planemo/pull/649
.. _Issue 620: https://github.com/galaxyproject/planemo/issues/620
.. _Pull Request 643: https://github.com/galaxyproject/planemo/pull/643
.. _Pull Request 642: https://github.com/galaxyproject/planemo/pull/642
.. _Pull Request 641: https://github.com/galaxyproject/planemo/pull/641
.. _Pull Request 639: https://github.com/galaxyproject/planemo/pull/639
.. _Pull Request 635: https://github.com/galaxyproject/planemo/pull/635
.. _Issue 633: https://github.com/galaxyproject/planemo/issues/633
.. _Issue 260: https://github.com/galaxyproject/planemo/issues/260
.. _Pull Request 638: https://github.com/galaxyproject/planemo/pull/638
.. _6638caa: https://github.com/galaxyproject/planemo/commit/6638caa
.. _8faf661: https://github.com/galaxyproject/planemo/commit/8faf661
.. _e343b67: https://github.com/galaxyproject/planemo/commit/e343b67
.. _Pull Request 634: https://github.com/galaxyproject/planemo/pull/634
.. _84ebc1f: https://github.com/galaxyproject/planemo/commit/84ebc1f
.. _03c9658: https://github.com/galaxyproject/planemo/commit/03c9658
.. _08c067c: https://github.com/galaxyproject/planemo/commit/08c067c
.. _fca4183: https://github.com/galaxyproject/planemo/commit/fca4183
.. _Issue 564: https://github.com/galaxyproject/planemo/issues/564
.. _Pull Request 628: https://github.com/galaxyproject/planemo/pull/628
.. _Issue 515: https://github.com/galaxyproject/planemo/issues/515
.. _Pull Request 629: https://github.com/galaxyproject/planemo/pull/629
.. _Pull Request 614: https://github.com/galaxyproject/planemo/pull/614
.. _32acd68: https://github.com/galaxyproject/planemo/commit/32acd68
.. _4595953: https://github.com/galaxyproject/planemo/commit/4595953
.. _Pull Request 612: https://github.com/galaxyproject/planemo/pull/612
.. _Issue 388: https://github.com/galaxyproject/planemo/issues/388
.. _Pull Request 610: https://github.com/galaxyproject/planemo/pull/610
.. _Pull Request 609: https://github.com/galaxyproject/planemo/pull/609
.. _Pull Request 608: https://github.com/galaxyproject/planemo/pull/608
.. _Pull Request 605: https://github.com/galaxyproject/planemo/pull/605
.. _Pull Request 606: https://github.com/galaxyproject/planemo/pull/606
.. _Pull Request 602: https://github.com/galaxyproject/planemo/pull/602
.. _Pull Request 570: https://github.com/galaxyproject/planemo/pull/570
.. _9228416: https://github.com/galaxyproject/planemo/commit/9228416
.. _50d3c4a: https://github.com/galaxyproject/planemo/commit/50d3c4a
.. _Issue 578: https://github.com/galaxyproject/planemo/issues/578
.. _Pull Request 591: https://github.com/galaxyproject/planemo/pull/591
.. _Pull Request 590: https://github.com/galaxyproject/planemo/pull/590
.. _f0da66f: https://github.com/galaxyproject/planemo/commit/f0da66f
.. _19b2ee9: https://github.com/galaxyproject/planemo/commit/19b2ee9
.. _9da8387: https://github.com/galaxyproject/planemo/commit/9da8387
.. _08cef54: https://github.com/galaxyproject/planemo/commit/08cef54
.. _2e4e5fc: https://github.com/galaxyproject/planemo/commit/2e4e5fc
.. _2e4e5fc: https://github.com/galaxyproject/planemo/commit/2e4e5fc
.. _Issue 573: https://github.com/galaxyproject/planemo/issues/573
.. _Pull Request 579: https://github.com/galaxyproject/planemo/pull/579
.. _ccdd2d5: https://github.com/galaxyproject/planemo/commit/ccdd2d5
.. _e925ba1: https://github.com/galaxyproject/planemo/commit/e925ba1
.. _ea5324f: https://github.com/galaxyproject/planemo/commit/ea5324f
.. _ca88b0c: https://github.com/galaxyproject/planemo/commit/ca88b0c
.. _b6d8294: https://github.com/galaxyproject/planemo/commit/b6d8294
.. _6a6f164: https://github.com/galaxyproject/planemo/commit/6a6f164
.. _d6da3a8: https://github.com/galaxyproject/planemo/commit/d6da3a8
.. _1ef05d2: https://github.com/galaxyproject/planemo/commit/1ef05d2
.. _7cca2e4: https://github.com/galaxyproject/planemo/commit/7cca2e4
.. _34538de: https://github.com/galaxyproject/planemo/commit/34538de
.. _6f91719: https://github.com/galaxyproject/planemo/commit/6f91719
.. _Pull Request 566: https://github.com/galaxyproject/planemo/pull/566
.. _Pull Request 559: https://github.com/galaxyproject/planemo/pull/559
.. _Pull Request 561: https://github.com/galaxyproject/planemo/pull/561
.. _Pull Request 565: https://github.com/galaxyproject/planemo/pull/565
.. _Pull Request 555: https://github.com/galaxyproject/planemo/pull/555
.. _a8e797b: https://github.com/galaxyproject/planemo/commit/a8e797b
.. _6c03de8: https://github.com/galaxyproject/planemo/commit/6c03de8
.. _ef4b9f4: https://github.com/galaxyproject/planemo/commit/ef4b9f4
.. _f7b6c7e: https://github.com/galaxyproject/planemo/commit/f7b6c7e
.. _07d94bd: https://github.com/galaxyproject/planemo/commit/07d94bd
.. _ca19910: https://github.com/galaxyproject/planemo/commit/ca19910
.. _24008ab: https://github.com/galaxyproject/planemo/commit/24008ab
.. _ce44e87: https://github.com/galaxyproject/planemo/commit/ce44e87
.. _Pull Request 550: https://github.com/galaxyproject/planemo/pull/550
.. _c2204b3: https://github.com/galaxyproject/planemo/commit/c2204b3
.. _c262b6d: https://github.com/galaxyproject/planemo/commit/c262b6d
.. _Pull Request 539: https://github.com/galaxyproject/planemo/pull/539
.. _Pull Request 541: https://github.com/galaxyproject/planemo/pull/541
.. _Pull Request 540: https://github.com/galaxyproject/planemo/pull/540
.. _Pull Request 545: https://github.com/galaxyproject/planemo/pull/545
.. _Pull Request 546: https://github.com/galaxyproject/planemo/pull/546
.. _3ceaa40: https://github.com/galaxyproject/planemo/commit/3ceaa40
.. _057f4f0: https://github.com/galaxyproject/planemo/commit/057f4f0
.. _9fdf490: https://github.com/galaxyproject/planemo/commit/9fdf490
.. _8c088c6: https://github.com/galaxyproject/planemo/commit/8c088c6
.. _e2398fb: https://github.com/galaxyproject/planemo/commit/e2398fb
.. _Pull Request 526: https://github.com/galaxyproject/planemo/pull/526
.. _Pull Request 528: https://github.com/galaxyproject/planemo/pull/528
.. _Pull Request 525: https://github.com/galaxyproject/planemo/pull/525
.. _a811e65: https://github.com/galaxyproject/planemo/commit/a811e65
.. _Pull Request 521: https://github.com/galaxyproject/planemo/pull/521
.. _a066afb: https://github.com/galaxyproject/planemo/commit/a066afb
.. _Pull Request 512: https://github.com/galaxyproject/planemo/pull/512
.. _08bb354: https://github.com/galaxyproject/planemo/commit/08bb354
.. _Pull Request 513: https://github.com/galaxyproject/planemo/pull/513
.. _Pull Request 510: https://github.com/galaxyproject/planemo/pull/510
.. _e890ab5: https://github.com/galaxyproject/planemo/commit/e890ab5
.. _Pull Request 507: https://github.com/galaxyproject/planemo/pull/507
.. _d53bcd6: https://github.com/galaxyproject/planemo/commit/d53bcd6
.. _725b232: https://github.com/galaxyproject/planemo/commit/725b232
.. _Pull Request 498: https://github.com/galaxyproject/planemo/pull/498
.. _01584c5: https://github.com/galaxyproject/planemo/commit/01584c5
.. _01f2af9: https://github.com/galaxyproject/planemo/commit/01f2af9
.. _0298510: https://github.com/galaxyproject/planemo/commit/0298510
.. _02a08a0: https://github.com/galaxyproject/planemo/commit/02a08a0
.. _05cc9f4: https://github.com/galaxyproject/planemo/commit/05cc9f485ee87bc344e3f43bb1cfd025a16a6247
.. _069e7ba: https://github.com/galaxyproject/planemo/commit/069e7ba
.. _08de8de: https://github.com/galaxyproject/planemo/commit/08de8de
.. _0bd4ff0: https://github.com/galaxyproject/planemo/commit/0bd4ff0
.. _0e4f70a: https://github.com/galaxyproject/planemo/commit/0e4f70a
.. _0f8cb10: https://github.com/galaxyproject/planemo/commit/0f8cb10
.. _13a5ae7: https://github.com/galaxyproject/planemo/commit/13a5ae7
.. _15804be: https://github.com/galaxyproject/planemo/commit/15804be
.. _15d33c7: https://github.com/galaxyproject/planemo/commit/15d33c7
.. _182fe57: https://github.com/galaxyproject/planemo/commit/182fe57
.. _1927168: https://github.com/galaxyproject/planemo/commit/1927168
.. _1982076: https://github.com/galaxyproject/planemo/commit/1982076
.. _19900a6: https://github.com/galaxyproject/planemo/commit/19900a6
.. _1a157d4: https://github.com/galaxyproject/planemo/commit/1a157d4
.. _1a85493: https://github.com/galaxyproject/planemo/commit/1a85493
.. _1c6cfbb: https://github.com/galaxyproject/planemo/commit/1c6cfbb
.. _1c7ee5b: https://github.com/galaxyproject/planemo/commit/1c7ee5b
.. _1cd0e2d: https://github.com/galaxyproject/planemo/commit/1cd0e2d
.. _1e3668a: https://github.com/galaxyproject/planemo/commit/1e3668a
.. _2052db0: https://github.com/galaxyproject/planemo/commit/2052db0
.. _20a8680: https://github.com/galaxyproject/planemo/commit/20a86807cb7ea87db2dbc0197ae08a40df3ab2bc
.. _21bb463: https://github.com/galaxyproject/planemo/commit/21bb463ad6c321bcb669603049a5e89a69766ad9
.. _25ef0d5: https://github.com/galaxyproject/planemo/commit/25ef0d5
.. _26e378e: https://github.com/galaxyproject/planemo/commit/26e378e
.. _26e3cdb: https://github.com/galaxyproject/planemo/commit/26e3cdb
.. _2a7c792: https://github.com/galaxyproject/planemo/commit/2a7c792
.. _2ae2b49: https://github.com/galaxyproject/planemo/commit/2ae2b49
.. _2e41e0a: https://github.com/galaxyproject/planemo/commit/2e41e0a
.. _2f66fc3: https://github.com/galaxyproject/planemo/commit/2f66fc3
.. _30a9c3f: https://github.com/galaxyproject/planemo/commit/30a9c3f
.. _32c6e7f: https://github.com/galaxyproject/planemo/commit/32c6e7f78bb8f04d27615cfd8948b0b89f27b4e6
.. _33294d2: https://github.com/galaxyproject/planemo/commit/33294d2
.. _334f2d4: https://github.com/galaxyproject/planemo/commit/334f2d4
.. _343902d: https://github.com/galaxyproject/planemo/commit/343902d
.. _3499ca0: https://github.com/galaxyproject/planemo/commit/3499ca0a15affcaf8ac9efc55880da40b0626679
.. _358a42c: https://github.com/galaxyproject/planemo/commit/358a42c
.. _36ac6d8: https://github.com/galaxyproject/planemo/commit/36ac6d8
.. _36f7cb1: https://github.com/galaxyproject/planemo/commit/36f7cb114f77731f90860d513a930e10ce5c1ba5
.. _37dcc07: https://github.com/galaxyproject/planemo/commit/37dcc07
.. _39fedd2: https://github.com/galaxyproject/planemo/commit/39fedd2
.. _3f4ab44: https://github.com/galaxyproject/planemo/commit/3f4ab44
.. _40a1f57: https://github.com/galaxyproject/planemo/commit/40a1f57
.. _411a8da: https://github.com/galaxyproject/planemo/commit/411a8da21c92ba37c7ad95bfce9928d9b8fd998e
.. _44de95c: https://github.com/galaxyproject/planemo/commit/44de95c0d7087a5822941959f9a062f6382e329b
.. _45135ff: https://github.com/galaxyproject/planemo/commit/45135ff
.. _4823c5e: https://github.com/galaxyproject/planemo/commit/4823c5e
.. _49c5c1e: https://github.com/galaxyproject/planemo/commit/49c5c1e
.. _4c71299: https://github.com/galaxyproject/planemo/commit/4c71299
.. _4cd571c: https://github.com/galaxyproject/planemo/commit/4cd571c
.. _4d29bf1: https://github.com/galaxyproject/planemo/commit/4d29bf1
.. _4d6f7d9: https://github.com/galaxyproject/planemo/commit/4d6f7d9
.. _4e1377c: https://github.com/galaxyproject/planemo/commit/4e1377c
.. _4f61025: https://github.com/galaxyproject/planemo/commit/4f61025
.. _508dce7: https://github.com/galaxyproject/planemo/commit/508dce7
.. _53a6766: https://github.com/galaxyproject/planemo/commit/53a6766cdebdddc976189f6dc6a264bb4105c4bf
.. _53edd99: https://github.com/galaxyproject/planemo/commit/53edd99
.. _552059f: https://github.com/galaxyproject/planemo/commit/552059f
.. _572e754: https://github.com/galaxyproject/planemo/commit/572e754
.. _5b97f2e: https://github.com/galaxyproject/planemo/commit/5b97f2e
.. _5d08b67: https://github.com/galaxyproject/planemo/commit/5d08b67
.. _5d7db92: https://github.com/galaxyproject/planemo/commit/5d7db92
.. _5e0b6d1: https://github.com/galaxyproject/planemo/commit/5e0b6d1
.. _63cd431: https://github.com/galaxyproject/planemo/commit/63cd431
.. _63e456c: https://github.com/galaxyproject/planemo/commit/63e456c
.. _6409449: https://github.com/galaxyproject/planemo/commit/6409449
.. _6514ff5: https://github.com/galaxyproject/planemo/commit/6514ff5
.. _65b999d: https://github.com/galaxyproject/planemo/commit/65b999d21bacc133a80ecf5f61e0728afec66ccc
.. _6b4e7a6: https://github.com/galaxyproject/planemo/commit/6b4e7a6
.. _6bcf699: https://github.com/galaxyproject/planemo/commit/6bcf699
.. _6d0f502: https://github.com/galaxyproject/planemo/commit/6d0f502
.. _6d81a94: https://github.com/galaxyproject/planemo/commit/6d81a94
.. _6e1e726: https://github.com/galaxyproject/planemo/commit/6e1e726
.. _7572e99: https://github.com/galaxyproject/planemo/commit/7572e99
.. _764ce01: https://github.com/galaxyproject/planemo/commit/764ce01
.. _775bf49: https://github.com/galaxyproject/planemo/commit/775bf49
.. _776773c: https://github.com/galaxyproject/planemo/commit/776773c
.. _78f8274: https://github.com/galaxyproject/planemo/commit/78f82747996e4a28f96c85ad72efe5e54c8c74bd
.. _7be1bf5: https://github.com/galaxyproject/planemo/commit/7be1bf5
.. _7c69bf6: https://github.com/galaxyproject/planemo/commit/7c69bf6
.. _7d07782: https://github.com/galaxyproject/planemo/commit/7d077828559c9c9c352ac814f9e3b86b1b3a2a9f
.. _8117e03: https://github.com/galaxyproject/planemo/commit/8117e03
.. _8207026: https://github.com/galaxyproject/planemo/commit/8207026
.. _826d371: https://github.com/galaxyproject/planemo/commit/826d371
.. _82e8b1f: https://github.com/galaxyproject/planemo/commit/82e8b1f17eae526aeb341cb4fffb8d09d73bb419
.. _834bfb2: https://github.com/galaxyproject/planemo/commit/834bfb2929d367892a3abe9c0b88d5a0277d7905
.. _83e227a: https://github.com/galaxyproject/planemo/commit/83e227a
.. _85b9614: https://github.com/galaxyproject/planemo/commit/85b961465f46351507f80ddc3758349535060502
.. _89674cb: https://github.com/galaxyproject/planemo/commit/89674cb
.. _8b31850: https://github.com/galaxyproject/planemo/commit/8b31850
.. _8e96864: https://github.com/galaxyproject/planemo/commit/8e96864
.. _8eda729: https://github.com/galaxyproject/planemo/commit/8eda729
.. _912df02: https://github.com/galaxyproject/planemo/commit/912df02
.. _916f610: https://github.com/galaxyproject/planemo/commit/916f610
.. _93b7bda: https://github.com/galaxyproject/planemo/commit/93b7bda
.. _94097c7: https://github.com/galaxyproject/planemo/commit/94097c7
.. _9427b47: https://github.com/galaxyproject/planemo/commit/9427b47
.. _94645ed: https://github.com/galaxyproject/planemo/commit/94645ed
.. _949a36d: https://github.com/galaxyproject/planemo/commit/949a36d
.. _95d5cba: https://github.com/galaxyproject/planemo/commit/95d5cba
.. _965511d: https://github.com/galaxyproject/planemo/commit/965511d
.. _988de1d: https://github.com/galaxyproject/planemo/commit/988de1d
.. _98fdc8c: https://github.com/galaxyproject/planemo/commit/98fdc8c
.. _99ee51a: https://github.com/galaxyproject/planemo/commit/99ee51a
.. _9bf1eab: https://github.com/galaxyproject/planemo/commit/9bf1eab
.. _9e746b4: https://github.com/galaxyproject/planemo/commit/9e746b455e3b15219878cddcdeda722979639401
.. _9f3957d: https://github.com/galaxyproject/planemo/commit/9f3957d
.. _9ff0d2d: https://github.com/galaxyproject/planemo/commit/9ff0d2d
.. _CWL: http://www.commonwl.org/
.. _Issue 108: https://github.com/galaxyproject/planemo/issues/108
.. _Issue 114: https://github.com/galaxyproject/planemo/issues/114
.. _Issue 118: https://github.com/galaxyproject/planemo/issues/118
.. _Issue 124: https://github.com/galaxyproject/planemo/issues/#124
.. _Issue 138: https://github.com/galaxyproject/planemo/issues/#138
.. _Issue 139: https://github.com/galaxyproject/planemo/issues/139
.. _Issue 150: https://github.com/galaxyproject/planemo/issues/150
.. _Issue 156: https://github.com/galaxyproject/planemo/issues/156
.. _Issue 158: https://github.com/galaxyproject/planemo/issues/158
.. _Issue 159: https://github.com/galaxyproject/planemo/issues/159
.. _Issue 15: https://github.com/galaxyproject/planemo/issues/15
.. _Issue 161: https://github.com/galaxyproject/planemo/issues/161
.. _Issue 167: https://github.com/galaxyproject/planemo/issues/167
.. _Issue 168: https://github.com/galaxyproject/planemo/issues/168
.. _Issue 169: https://github.com/galaxyproject/planemo/issues/169
.. _Issue 170: https://github.com/galaxyproject/planemo/issues/170
.. _Issue 176: https://github.com/galaxyproject/planemo/issues/176
.. _Issue 179: https://github.com/galaxyproject/planemo/issues/179
.. _Issue 180: https://github.com/galaxyproject/planemo/issues/180
.. _Issue 181: https://github.com/galaxyproject/planemo/issues/181
.. _Issue 184: https://github.com/galaxyproject/planemo/issues/184
.. _Issue 186: https://github.com/galaxyproject/planemo/issues/186
.. _Issue 188: https://github.com/galaxyproject/planemo/issues/188
.. _Issue 189: https://github.com/galaxyproject/planemo/issues/189
.. _Issue 192: https://github.com/galaxyproject/planemo/issues/192
.. _Issue 205: https://github.com/galaxyproject/planemo/issues/205
.. _Issue 206: https://github.com/galaxyproject/planemo/issues/206
.. _Issue 209: https://github.com/galaxyproject/planemo/issues/209
.. _Issue 211: https://github.com/galaxyproject/planemo/issues/211
.. _Issue 217: https://github.com/galaxyproject/planemo/issues/217
.. _Issue 223: https://github.com/galaxyproject/planemo/issues/223
.. _Issue 231: https://github.com/galaxyproject/planemo/issues/231
.. _Issue 233: https://github.com/galaxyproject/planemo/issues/233
.. _Issue 240: https://github.com/galaxyproject/planemo/issues/240
.. _Issue 243: https://github.com/galaxyproject/planemo/issues/243
.. _Issue 245: https://github.com/galaxyproject/planemo/issues/245
.. _Issue 246: https://github.com/galaxyproject/planemo/issues/246
.. _Issue 272: https://github.com/galaxyproject/planemo/issues/272
.. _Issue 303: https://github.com/galaxyproject/planemo/issues/303
.. _Issue 313: https://github.com/galaxyproject/planemo/issues/313
.. _Issue 329: https://github.com/galaxyproject/planemo/issues/329
.. _Issue 333: https://github.com/galaxyproject/planemo/issues/333
.. _Issue 361: https://github.com/galaxyproject/planemo/issues/361
.. _Issue 362: https://github.com/galaxyproject/planemo/issues/362
.. _Issue 373: https://github.com/galaxyproject/planemo/issues/373
.. _Issue 391: https://github.com/galaxyproject/planemo/issues/391
.. _Issue 416: https://github.com/galaxyproject/planemo/issues/416
.. _Issue 420: https://github.com/galaxyproject/planemo/issues/420
.. _Issue 475: https://github.com/galaxyproject/planemo/issues/475
.. _Issue 61: https://github.com/galaxyproject/planemo/issues/61
.. _Issue 70: https://github.com/galaxyproject/planemo/issues/70
.. _Issue 78: https://github.com/galaxyproject/planemo/issues/78
.. _Issue 80: https://github.com/galaxyproject/planemo/issues/80
.. _Issue 83: https://github.com/galaxyproject/planemo/issues/83
.. _Issue 88: https://github.com/galaxyproject/planemo/issues/88
.. _Issue 89: https://github.com/galaxyproject/planemo/issues/#89
.. _Issue 91: https://github.com/galaxyproject/planemo/issues/#91
.. _Pull Request 101: https://github.com/galaxyproject/planemo/pull/101
.. _Pull Request 102: https://github.com/galaxyproject/planemo/pull/102
.. _Pull Request 104: https://github.com/galaxyproject/planemo/pull/104
.. _Pull Request 111: https://github.com/galaxyproject/planemo/pull/111
.. _Pull Request 113: https://github.com/galaxyproject/planemo/pull/113
.. _Pull Request 129: https://github.com/galaxyproject/planemo/pull/129
.. _Pull Request 130: https://github.com/galaxyproject/planemo/pull/130
.. _Pull Request 143: https://github.com/galaxyproject/planemo/pull/143
.. _Pull Request 151: https://github.com/galaxyproject/planemo/pull/151
.. _Pull Request 155: https://github.com/galaxyproject/planemo/pull/155
.. _Pull Request 164: https://github.com/galaxyproject/planemo/pull/164
.. _Pull Request 171: https://github.com/galaxyproject/planemo/pull/171
.. _Pull Request 173: https://github.com/galaxyproject/planemo/pull/173
.. _Pull Request 175: https://github.com/galaxyproject/planemo/pull/175
.. _Pull Request 185: https://github.com/galaxyproject/planemo/pull/185
.. _Pull Request 186: https://github.com/galaxyproject/planemo/pull/186
.. _Pull Request 187: https://github.com/galaxyproject/planemo/pull/187
.. _Pull Request 190: https://github.com/galaxyproject/planemo/pull/190
.. _Pull Request 196: https://github.com/galaxyproject/planemo/pull/196
.. _Pull Request 1: https://github.com/galaxyproject/planemo/pull/1
.. _Pull Request 200: https://github.com/galaxyproject/planemo/pull/200
.. _Pull Request 203: https://github.com/galaxyproject/planemo/pull/203
.. _Pull Request 206: https://github.com/galaxyproject/planemo/pull/206
.. _Pull Request 207: https://github.com/galaxyproject/planemo/pull/207
.. _Pull Request 208: https://github.com/galaxyproject/planemo/pull/208
.. _Pull Request 210: https://github.com/galaxyproject/planemo/pull/210
.. _Pull Request 213: https://github.com/galaxyproject/planemo/pull/213
.. _Pull Request 215: https://github.com/galaxyproject/planemo/pull/215
.. _Pull Request 216: https://github.com/galaxyproject/planemo/pull/216
.. _Pull Request 22: https://github.com/galaxyproject/planemo/pull/22
.. _Pull Request 230: https://github.com/galaxyproject/planemo/pull/230
.. _Pull Request 235: https://github.com/galaxyproject/planemo/pull/235
.. _Pull Request 23: https://github.com/galaxyproject/planemo/pull/23
.. _Pull Request 251: https://github.com/galaxyproject/planemo/pull/251
.. _Pull Request 253: https://github.com/galaxyproject/planemo/pull/253
.. _Pull Request 254: https://github.com/galaxyproject/planemo/pull/254
.. _Pull Request 255: https://github.com/galaxyproject/planemo/pull/255
.. _Pull Request 256: https://github.com/galaxyproject/planemo/pull/256
.. _Pull Request 277: https://github.com/galaxyproject/planemo/pull/277
.. _Pull Request 278: https://github.com/galaxyproject/planemo/pull/278
.. _Pull Request 284: https://github.com/galaxyproject/planemo/pull/284
.. _Pull Request 285: https://github.com/galaxyproject/planemo/pull/285
.. _Pull Request 287: https://github.com/galaxyproject/planemo/pull/287
.. _Pull Request 292: https://github.com/galaxyproject/planemo/pull/292
.. _Pull Request 297: https://github.com/galaxyproject/planemo/pull/297
.. _Pull Request 29: https://github.com/galaxyproject/planemo/pull/29
.. _Pull Request 301: https://github.com/galaxyproject/planemo/pull/301
.. _Pull Request 304: https://github.com/galaxyproject/planemo/pull/304
.. _Pull Request 305: https://github.com/galaxyproject/planemo/pull/305
.. _Pull Request 307: https://github.com/galaxyproject/planemo/pull/307
.. _Pull Request 309: https://github.com/galaxyproject/planemo/pull/309
.. _Pull Request 310: https://github.com/galaxyproject/planemo/pull/310
.. _Pull Request 311: https://github.com/galaxyproject/planemo/pull/311
.. _Pull Request 312: https://github.com/galaxyproject/planemo/pull/312
.. _Pull Request 314: https://github.com/galaxyproject/planemo/pull/314
.. _Pull Request 316: https://github.com/galaxyproject/planemo/pull/316
.. _Pull Request 322: https://github.com/galaxyproject/planemo/pull/322
.. _Pull Request 327: https://github.com/galaxyproject/planemo/pull/327
.. _Pull Request 330: https://github.com/galaxyproject/planemo/pull/330
.. _Pull Request 333: https://github.com/galaxyproject/planemo/pull/333
.. _Pull Request 334: https://github.com/galaxyproject/planemo/pull/334
.. _Pull Request 335: https://github.com/galaxyproject/planemo/pull/335
.. _Pull Request 339: https://github.com/galaxyproject/planemo/pull/339
.. _Pull Request 33: https://github.com/galaxyproject/planemo/pull/33
.. _Pull Request 343: https://github.com/galaxyproject/planemo/pull/343
.. _Pull Request 344: https://github.com/galaxyproject/planemo/pull/344
.. _Pull Request 345: https://github.com/galaxyproject/planemo/pull/345
.. _Pull Request 350: https://github.com/galaxyproject/planemo/pull/350
.. _Pull Request 351: https://github.com/galaxyproject/planemo/pull/351
.. _Pull Request 356: https://github.com/galaxyproject/planemo/pull/356
.. _Pull Request 375: https://github.com/galaxyproject/planemo/pull/375
.. _Pull Request 390: https://github.com/galaxyproject/planemo/pull/390
.. _Pull Request 394: https://github.com/galaxyproject/planemo/pull/394
.. _Pull Request 398: https://github.com/galaxyproject/planemo/pull/398
.. _Pull Request 403: https://github.com/galaxyproject/planemo/pull/403
.. _Pull Request 40: https://github.com/galaxyproject/planemo/pull/40
.. _Pull Request 425: https://github.com/galaxyproject/planemo/pull/425
.. _Pull Request 426: https://github.com/galaxyproject/planemo/pull/426
.. _Pull Request 428: https://github.com/galaxyproject/planemo/pull/428
.. _Pull Request 429: https://github.com/galaxyproject/planemo/pull/429
.. _Pull Request 454: https://github.com/galaxyproject/planemo/pull/454
.. _Pull Request 472: https://github.com/galaxyproject/planemo/pull/472
.. _Pull Request 479: https://github.com/galaxyproject/planemo/pull/479
.. _Pull Request 480: https://github.com/galaxyproject/planemo/pull/480
.. _Pull Request 484: https://github.com/galaxyproject/planemo/pull/484
.. _Pull Request 488: https://github.com/galaxyproject/planemo/pull/488
.. _Pull Request 491: https://github.com/galaxyproject/planemo/pull/491
.. _Pull Request 51: https://github.com/galaxyproject/planemo/pull/51
.. _Pull Request 56: https://github.com/galaxyproject/planemo/pull/56
.. _Pull Request 63: https://github.com/galaxyproject/planemo/pull/63
.. _Pull Request 68: https://github.com/galaxyproject/planemo/pull/68
.. _Pull Request 6: https://github.com/galaxyproject/planemo/pull/6
.. _Pull Request 98: https://github.com/galaxyproject/planemo/pull/98
.. _Pull Request 99: https://github.com/galaxyproject/planemo/pull/99
.. _XSD: http://www.w3schools.com/schema/
.. _a13a120: https://github.com/galaxyproject/planemo/commit/a13a120
.. _a2c13e4: https://github.com/galaxyproject/planemo/commit/a2c13e46259e3be35de1ecaae858ba818bb94734
.. _a2ee135: https://github.com/galaxyproject/planemo/commit/a2ee135
.. _a4110a8: https://github.com/galaxyproject/planemo/commit/a4110a85a770988e5cd3c31ccc9475717897d59c
.. _a4e6958: https://github.com/galaxyproject/planemo/commit/a4e6958
.. _a58a3b8: https://github.com/galaxyproject/planemo/commit/a58a3b8
.. _a87899b: https://github.com/galaxyproject/planemo/commit/a87899b
.. _aad1eed: https://github.com/galaxyproject/planemo/commit/aad1eed
.. _ac4f828: https://github.com/galaxyproject/planemo/commit/ac4f82898f7006799142503a33c3978428660ce7
.. _ad3b2f0: https://github.com/galaxyproject/planemo/commit/ad3b2f0
.. _af39061: https://github.com/galaxyproject/planemo/commit/af390612004dab636d8696839bb723d39f97c85d
.. _af7448c: https://github.com/galaxyproject/planemo/commit/af7448c
.. _b0b867e: https://github.com/galaxyproject/planemo/commit/b0b867e
.. _b1c8f1d: https://github.com/galaxyproject/planemo/commit/b1c8f1d
.. _b53006d: https://github.com/galaxyproject/planemo/commit/b53006d
.. _b757791: https://github.com/galaxyproject/planemo/commit/b757791
.. _b7d9e96: https://github.com/galaxyproject/planemo/commit/b7d9e96
.. _b86fe1f: https://github.com/galaxyproject/planemo/commit/b86fe1f
.. _b8d90ab: https://github.com/galaxyproject/planemo/commit/b8d90abab8bf53ae2e7cca4317223c01af9ab68c
.. _b9232e5: https://github.com/galaxyproject/planemo/commit/b9232e55e713abbd1d9ce8b0b34cbec6c701dc17
.. _badc25f: https://github.com/galaxyproject/planemo/commit/badc25fca495b61457ffb2e027f3fe9cf17c798f
.. _bioblend: https://github.com/galaxyproject/bioblend/
.. _c1713d2: https://github.com/galaxyproject/planemo/commit/c1713d2
.. _c23569f: https://github.com/galaxyproject/planemo/commit/c23569f
.. _c444855: https://github.com/galaxyproject/planemo/commit/c444855
.. _c4dfd55: https://github.com/galaxyproject/planemo/commit/c4dfd55
.. _c8640b6: https://github.com/galaxyproject/planemo/commit/c8640b6
.. _cb5b906: https://github.com/galaxyproject/planemo/commit/cb5b906
.. _cc1a447: https://github.com/galaxyproject/planemo/commit/cc1a447
.. _cc8abb6: https://github.com/galaxyproject/planemo/commit/cc8abb6
.. _ce8e1be: https://github.com/galaxyproject/planemo/commit/ce8e1be
.. _cwltool: https://github.com/common-workflow-language/cwltool/.. _d26929e: https://github.com/galaxyproject/planemo/commit/d26929e
.. _d26929e: https://github.com/galaxyproject/planemo/commit/d26929e
.. _d755fe7: https://github.com/galaxyproject/planemo/commit/d755fe7
.. _d76b489: https://github.com/galaxyproject/planemo/commit/d76b489
.. _d8f2038: https://github.com/galaxyproject/planemo/commit/d8f2038
.. _dad2d9d: https://github.com/galaxyproject/planemo/commit/dad2d9d
.. _dd94ddc: https://github.com/galaxyproject/planemo/commit/dd94ddc
.. _dff4f33: https://github.com/galaxyproject/planemo/commit/dff4f33c750a8dbe651c38e149a26dd42e706a82
.. _e0577e7: https://github.com/galaxyproject/planemo/commit/e0577e7
.. _e0acf91: https://github.com/galaxyproject/planemo/commit/e0acf91
.. _e38c436: https://github.com/galaxyproject/planemo/commit/e38c436
.. _e769118: https://github.com/galaxyproject/planemo/commit/e769118
.. _e8c1d45: https://github.com/galaxyproject/planemo/commit/e8c1d45f0c9a11bcf69ec2967836c3b8f432dd97
.. _eb039c0: https://github.com/galaxyproject/planemo/commit/eb039c0
.. _ec6e30f: https://github.com/galaxyproject/planemo/commit/ec6e30f
.. _efc5f30: https://github.com/galaxyproject/planemo/commit/efc5f30
.. _f0610d7: https://github.com/galaxyproject/planemo/commit/f0610d7
.. _f3394e7: https://github.com/galaxyproject/planemo/commit/f3394e7
.. _f3c6917: https://github.com/galaxyproject/planemo/commit/f3c6917
.. _f3cafaa: https://github.com/galaxyproject/planemo/commit/f3cafaa
.. _f7554d1: https://github.com/galaxyproject/planemo/commit/f7554d1
.. _f798c7e: https://github.com/galaxyproject/planemo/commit/f798c7e
.. _f854138: https://github.com/galaxyproject/planemo/commit/f854138
.. _f99f6c1: https://github.com/galaxyproject/planemo/commit/f99f6c1
.. _fba3874: https://github.com/galaxyproject/planemo/commit/fba3874
.. _fdb1b51: https://github.com/galaxyproject/planemo/commit/fdb1b51
.. _fdce74c: https://github.com/galaxyproject/planemo/commit/fdce74c
.. _fe7ad46: https://github.com/galaxyproject/planemo/commit/fe7ad46
.. _fea51fc: https://github.com/galaxyproject/planemo/commit/fea51fc
.. _lxml: http://lxml.de/
.. _nose: https://nose.readthedocs.org/en/latest/
.. _xmllint: http://xmlsoft.org/xmllint.html
.. _Conda: http://conda.pydata.org/
.. _Tool Factory: http://bioinformatics.oxfordjournals.org/content/early/2012/09/27/bioinformatics.bts573.full.pdf
.. _git: https://git-scm.com/
.. _anaconda-verify: https://github.com/ContinuumIO/anaconda-verify
.. _galaxy.xsd: https://github.com/galaxyproject/planemo/blob/master/planemo/xml/xsd/tool/galaxy.xsd
.. _setup.py: https://github.com/galaxyproject/planemo/blob/master/setup.py
.. _Bioconductor: https://www.bioconductor.org/
.. _tools-iuc: https://github.com/galaxyproject/tools-iuc
.. _PyPI: https://pypi.python.org/pypi
.. _Involucro: https://github.com/involucro/involucro
.. _Bioconda: https://bioconda.github.io/
.. _pip: https://pip.pypa.io/en/stable/
.. _BioContainers: http://biocontainers.pro/
.. _Toil: https://github.com/BD2KGenomics/toil
.. _quay.io: https://quay.io/
.. _galaxy-lib: https://github.com/galaxyproject/galaxy-lib
.. _gxwf: https://github.com/simonbray/gxwf
.. _Cheetah: https://cheetahtemplate.org/users_guide/intro.html
.. _Allure: http://allure.qatools.ru/
.. _abretaud: https://github.com/abretaud
.. _hexylena: https://github.com/hexylena
.. _peterjc: https://github.com/peterjc
.. _mr-c: https://github.com/mr-c
.. _martenson: https://github.com/martenson
.. _nsoranzo: https://github.com/nsoranzo
.. _nturaga: https://github.com/nturaga
.. _bgruening: https://github.com/bgruening
.. _carlfeberhard: https://github.com/carlfeberhard
.. _lparsons: https://github.com/lparsons
.. _kellrott: https://github.com/kellrott
.. _mvdbeek: https://github.com/mvdbeek
.. _natefoo: https://github.com/natefoo
.. _pstew: https://github.com/pstew
.. _ramezrawas: https://github.com/ramezrawas
.. _chambm: https://github.com/chambm
.. _takadonet: https://github.com/takadonet
.. _petrkadlec: https://github.com/petrkadlec
.. _pvanheus: https://github.com/pvanheus
.. _einon: https://github.com/einon
.. _blankenberg: https://github.com/blankenberg
.. _JeanFred: https://github.com/JeanFred
.. _gregvonkuster: https://github.com/gregvonkuster
.. _remimarenco: https://github.com/remimarenco
.. _thriqon: https://github.com/thriqon
.. _RJMW: https://github.com/RJMW
.. _manabuishii: https://github.com/manabuishii
.. _dfornika: https://github.com/dfornika
.. _bernt-matthias: https://github.com/bernt-matthias
.. _katrinleinweber: https://github.com/katrinleinweber
.. _bebatut: https://github.com/bebatut
.. _selten: https://github.com/selten
.. _shiltemann: https://github.com/shiltemann
.. _bedroesb: https://github.com/bedroesb
.. _ic4f: https://github.com/ic4f
.. _martin-raden: https://github.com/martin-raden
.. _andreassko: https://github.com/andreassko
.. _mblue9: https://github.com/mblue9
.. _TMiguelT: https://github.com/TMiguelT
.. _bedroesb: https://github.com/bedroesb
.. _simonbray: https://github.com/simonbray
.. _gallardoalba: https://github.com/gallardoalba
.. _stain: https://github.com/stain
.. _profgiuseppe: https://github.com/profgiuseppe
.. _adRn-s: https://github.com/adRn-s
.. _lldelisle: https://github.com/lldelisle
.. _wm75: https://github.com/wm75
.. _SimonWaldherr: https://github.com/SimonWaldherr
.. _mstabrin: https://github.com/mstabrin
.. _paulzierep: https://github.com/paulzierep
.. _Kulivox: https://github.com/Kulivox
.. _Delphine-L: https://github.com/Delphine-L
.. _elichad: https://github.com/elichad
.. _pavanvidem: https://github.com/pavanvidem