Planemo

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* Fix bug with ``shed_lint --urls`` introduced in 0.38.0.
84ebc1f_

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* Trim down the default amount of logging during testing.
`Pull Request 629`_, `Issue 515`_
* Improved log messages during shed operations. 08c067c_
* Update tool XSD against latest Galaxy.
fca4183_, 03c9658_
* Fix bug where ``shed_lint --tools`` for a suite lints the same tools multiple
times.
`Issue 564`_, `Pull Request 628`_

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* Update to the latest `galaxy-lib`_ release. This means new installs start with
Miniconda 3 instead of Minicoda 2 and at a newer version. This fixes many
Conda_ related bugs.
* Change defaults so that Conda automatically initializes and performs tool installs
by default from within the spawned Galaxy server. The trio of flags
``--conda_dependency_resolution``, ``--conda_auto_install``, and ``--conda_auto_init``
are effectively enabled by default now. 4595953_
* Use the Galaxy cached dependency manager by default (thanks to `abretaud`_).
`Pull Request 612`_
* Test Conda dependency resolution for more versions of Galaxy including the forthcoming
release of 17.01.
* Update to the latest Galaxy tool XSD for various tool linting fixes. 32acd68_
* Fix pip ignores for ``bioconda_scripts`` (thanks to `nturaga`_)
`Pull Request 614`_

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* Fix move error when using ``project_init``.
`Issue 388`_, `Pull Request 610`_
* Improved integration testing for ``test`` command. `Pull Request 609`_
* Update CWL links to v1.0 (thanks to `mr-c`_).
`Pull Request 608`_

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* Bring in latest tool XSD file from Galaxy (thanks to `peterjc`_).
`Pull Request 605`_
* PEP8 fixes for various linting problems
(thanks to `peterjc`_).
`Pull Request 606`_
* Update tool syntax URL to new URL (thanks to `mvdbeek`_).
`Pull Request 602`_

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* Native support for building bioconductor tools and recipes
(thanks to `nturaga`_). `Pull Request 570`_
* Fixes for running Galaxy via docker-galaxy-stable (thanks to
`bgruening`_). 50d3c4a_
* Import order linting fixes (thanks to `bgruening`_).

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