Planemo

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* Load both cat1 versions when testing workflows `Pull Request 1146`_
* Fix isolated virtualenv not getting activated `Pull Request 1145`_
* Use bioblend's make_get_request for authenticated request `Pull Request 1144`_
* Display live logs when Galaxy is run in background `Pull Request 1142`_

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* Allow testing dir of workflows `Pull Request 1095`_
* Fix container register for gh workflow `Pull Request 1135`_, `Pull Request 1133`_
* Don't fail URL linting if blocked by CloudFlare `Pull Request 1134`_
1133`_
* Allow planemo run to stage exisiting datasets and relative paths (thanks to `simonbray`_).
`Pull Request 1128`_

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* Fix ``ci_find_tools`` and ``ci_find_repos`` commands. `Pull Request 1127`_

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* Allow running Galaxy workflow tests against externally defined workflows.
`Pull Request 1126`_, `Pull Request 1125`_,
`Pull Request 1123`_
* Require Python ``tabulate`` package for the ``list_invocations`` command.
`Pull Request 1124`_

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* Integrate important features from gxwf_ for running workflows - including
building up profile commands for creating aliases, allowing referencing workflows
by external IDs, and listing invocations (thanks to `simonbray`_).
`Pull Request 1076`_
* Documentation for using ``planemo run`` to execute workflows (thanks to `simonbray`_).
`Pull Request 1102`_
* Add ``workflow_upload`` command for publishing each workflow of a repository with many
workflows to their own standalone repository.
`Pull Request 1091`_
* Update github commands to authenticate with a token rather than
username/password (thanks to `simonbray`_).
`Pull Request 1083`_
* Document "advanced" tool test debugging (thanks to `bernt-matthias`_).
`Pull Request 1108`_
* Various fixes for workflow commands - including ``workflow_convert``,
``workflow_lint``, ``workflow_job_init``, and ``workflow_test_init``
(thanks to `simonbray`_).
`Pull Request 1101`_, `Pull Request 1118`_, `Pull Request 1121`_,
`Pull Request 1116`_, `Pull Request 1064`_
* Allow outputting test results as Allure_ framework results.
`Pull Request 1115`_
* Fix ``run_tests.sh`` invocation `Pull Request 1099`_
* Tiny typo in debugging output (thanks to `abretaud`_). `Pull Request 1066`_
* Fix typo in 'planemo test' help text for --skip_venv (thanks to
`peterjc`_).
`Pull Request 1068`_
* Fixes for CLI when ``external_galaxy`` is used as the engine (thanks to
`simonbray`_).
`Pull Request 1072`_
* Updating base image to 20.05 for training topics
(thanks to `bedroesb`_).
`Pull Request 1074`_
* Changes to update_test_data testing mode (thanks to `simonbray`_).
`Pull Request 1079`_
* Fix docker options when filling ``job_conf.xml`` template.
`Pull Request 1086`_
* Explicit tests for Galaxy 20.09. `Pull Request 1093`_
* Minor fix for ``ci_find_repos`` command. `Pull Request 1094`_
* Fix a couple of Cheetah_ urls in Galaxy tool documentation (thanks to `martenson`_).
`Pull Request 1096`_
* Fix doc link from a redirect loop to a section (thanks to `martenson`_).
`Pull Request 1110`_
* Clarify ``tutorial.md`` usage of citations (thanks to `blankenberg`_).
`Pull Request 1114`_
* Fix ``ZeroDivisionError`` when no tests are executed (thanks to `simonbray`_).
`Pull Request 1120`_

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* More documentation/support around running workflows including new command
to initialize workflow jobs ``workflow_init_job``.
`Pull Request 1052`_
* Workflow tests and documentation for tagging inputs. `Pull Request 1058`_
* Various documentation improvements.
`Pull Request 1061`_, `Pull Request 1062`_
* Add mypy type checking. `Pull Request 1060`_
* Progress decoupling Planemo's core from click & CLI interactions.
`Pull Request 1059`_
* Tests for workflow testing script. `Pull Request 821`_

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