Planemo

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* Change behavior of ``--docker`` flag, for a few releases it would require
Galaxy use a container for every non-upload tool. This breaks various
conversion tools for instance and so was reverted.
`Pull Request 733`_
* Add 'Accept' header when linting doc URLs (thanks to `nsoranzo`_).
`Pull Request 725`_
* Fix `--conda_auto_install` help (thanks to `nsoranzo`_).
`Pull Request 727`_
* Incremental progress toward CWL support via Galaxy.
`Pull Request 729`_, `Pull Request 732`_
* Update galaxy-lib to latest version to fix various issues.
`Pull Request 730`_
* Fix lint detected problems with documentation.
`Pull Request 731`_

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* Update to the latest `galaxy-lib`_ for Conda fixes. (thanks `nsoranzo`_)
and updated CWL_ utilities. `Pull Request 716`_, `Pull Request 723`_
* Update Conda_ channel order to sync with Bioconda_
(thanks to `nsoranzo`_). `Pull Request 715`_
* Experimental support running CWL_ workflows through the CWL_ fork of Galaxy.
* Mention ``planemo command --help`` in main help
(thanks to `peterjc`_). `Pull Request 709`_
* Bugfix handle ``None`` requirement versions when registering containers
(thanks to `bgruening`_). `Pull Request 704`_
* Bugfix for dependencies by pinning ruamel.yaml version
(thanks to `mvdbeek`_). `Pull Request 720`_

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* Fix and improve Galaxy root option specification options.
`Pull Request 701`_, 8a608e0_
* Update `planemo mull` to use a default action of `build-and-test` since
`build` no longer cleans up itself. ecc1bc2_
* Add a command to pre-install Involucro_.
`Pull Request 702`_

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* Remove stdio from generated tools - just use exit_code for everything.
91b6fa0_
* Implement some ad-hoc documentation tests. `Pull Request 699`_
* A large number of small enhancements and fixes for the documentation and
example projects.

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* Fix Readme typos (thanks to `manabuishii`_) 904d77a_
* Fix `container_register` to create pull requests against the newly finalized home of the
multi-package-containers registry repository.
9636682_
* Fix `use_global_config` and `use_env_var` for options with unspecified defaults.
475104c_


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* Conda/Container documentation and option naming improvements. `Pull Request
684`_
* Sync `galaxy.xsd` with latest upstream Galaxy updates (thanks to `nsoranzo`_).
`Pull Request 687`_
* Fix `ci_find_repos` command to not filter repos whose only modifications where
in subdirs (thanks to `nsoranzo`_).
`Pull Request 688`_
* Update `container_register` for mulled version 2 and repository name changes.
`Pull Request 689`_
* Better pull request messages for the `container_register` command.
`Pull Request 690`_

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